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In Part I of this contribution, a systematic coarse-grained description of the dynamics of a weakly-bending semiflexible polymer was developed. Here, we discuss analytical solutions of the established deterministic partial…

Soft Condensed Matter · Physics 2007-12-04 Oskar Hallatschek , Erwin Frey , Klaus Kroy

Twist stiffness and an asymmetric bending stiffness of a polymer or a polymer bundle is captured by the elastic ribbon model. We investigate the effects a ring geometry induces to a thermally fluctuating ribbon, finding bend-bend coupling…

Biomolecules · Quantitative Biology 2008-02-07 Karen Alim , Erwin Frey

Inspired by the ubiquity of composite filamentous networks in nature we investigate models of biopolymer networks that consist of interconnected floppy and stiff filaments. Numerical simulations carried out in three dimensions allow us to…

Biomolecules · Quantitative Biology 2015-05-19 Elisabeth M. Huisman , Claus Heussinger , Cornelis Storm , Gerard T. Barkema

We establish the Statistical Mechanics framework for a bundle of Nf living and uncrosslinked actin filaments in a supercritical solution of free monomers pressing against a mobile wall. The filaments are anchored normally to a fixed planar…

Biological Physics · Physics 2016-07-27 Alessia Perilli , Carlo Pierleoni , Giovanni Ciccotti , Jean Paul Ryckaert

We present an efficient computational methodology to obtain the viscoelastic response of dilute solutions of semiflexible filaments. By considering an approach based on the fluctuation-dissipation theorem, we were able to evaluate the…

Soft Condensed Matter · Physics 2021-01-20 L. K. R. Duarte , A. V. N. C. Teixeira , L. G. Rizzi

Small bubbles in fluids raise to the surface due to Archimede's force. Remarkably, in turbulent flows this process is severely hindered by the presence of vortex filaments, which act as moving potential wells, dynamically trapping light…

Fluid Dynamics · Physics 2024-09-17 Ziqi Wang , Xander M de Wit , Federico Toschi

The properties of semiflexible polymers tethered by one end to an impenetrable wall and exposed to oscillatory shear flow are investigated by mesoscale simulations. A polymer, confined in two dimensions, is described by a linear bead-spring…

Soft Condensed Matter · Physics 2021-12-14 Antonio Lamura , Roland G. Winkler , Gerhard Gompper

We briefly review recent advances in the hydrodynamic modeling of the dynamics of droplets on adaptive substrates, in particular, solids that are covered by polymer brushes. Thereby, the focus are long-wave and full-curvature variants of…

Fluid Dynamics · Physics 2024-08-05 Simon Hartmann , Jan Diekmann , Daniel Greve , Uwe Thiele

The effects of elasticity on filament thinning and breakup are investigated in microchannel cross flow. When a viscous solution is stretched by an external immiscible fluid, a low 100 ppm polymer concentration strongly affects the breakup…

Fluid Dynamics · Physics 2008-04-14 P. E. Arratia , J. P. Gollub , D. J. Durian

We address the fluid-structure interaction of flexible fin models oscillated in a water flow. Here, we investigate in particular the dependence of hydrodynamic force distributions on fin geometry and flapping frequency. For this purpose, we…

Fluid Dynamics · Physics 2021-04-23 Paule Dagenais , Christof M. Aegerter

We experimentally study the transient motion of a colloidal particle actively dragged by an optical trap through different viscoelastic fluids (wormlike micelles, polymer solutions, and entangled $\lambda$-phage DNA). We observe that, after…

Soft Condensed Matter · Physics 2015-10-21 Juan Ruben Gomez-Solano , Clemens Bechinger

We provide a detailed study of the interplay between the different interactions which appear in the Brownian motion of a micronsized sphere immersed in a viscoelastic fluid measured with optical trapping interferometry. To explore a wide…

Soft Condensed Matter · Physics 2017-05-26 P. Domínguez-García , László Forró , Sylvia Jeney

We develop general methods to calculate the mobilities of extended bodies in (or associated with) membranes and films. We demonstrate a striking difference between in-plane motion of rod-like inclusions and the corresponding case of bulk…

Soft Condensed Matter · Physics 2009-11-10 Alex J. Levine , T. B. Liverpool , F. C. MacKintosh

We report experiments on the deformation and transport of an elastic fiber in a viscous cellular flow, namely a lattice of counter-rotative vortices. We show that the fiber can buckle when approaching a stagnation point. By tuning either…

Soft Condensed Matter · Physics 2010-03-31 E. Wandersman , N. Quennouz , M. Fermigier , A. Lindner , O. du Roure

The nonequilibrium structural and dynamical properties of semiflexible active polar polymers subject to linear flow are studied by numerical simulations. Filaments are confined in two dimensions and immersed in a fluid described by the…

Soft Condensed Matter · Physics 2026-04-23 A. Lamura , R. G. Winkler

The motion of submerged magnetic microspheres rolling at a glass-water interface has been studied using magnetic rotation and optical tweezers combined with bright-field microscopy particle tracking techniques. Individual microspheres of…

Optics · Physics 2008-09-15 Rodney R. Agayan , Ron G. Smith , Raoul Kopelman

Free boundaries of biofilms advancing on surfaces evolve according to conservation laws coupled with systems of partial differential equations for velocities, pressures and chemicals affecting cell behavior. Thin film approximations lead to…

Analysis of PDEs · Mathematics 2024-03-18 Ana Carpio , Gema Duro

Microbial flagellates typically inhabit complex suspensions of polymeric material which can impact the swimming speed of motile microbes, filter-feeding of sessile cells, and the generation of biofilms. There is currently a need to better…

Soft Condensed Matter · Physics 2017-11-22 Andrew Kaan Balin , Andreas Zöttl , Julia M. Yeomans , Tyler Shendruk

To mimic the mechanical response of passive biological cilia in complex fluids, we study the bending dynamics of an anchored elastic fiber submitted to a dilute granular suspension under shear. We show that the bending fluctuations of the…

Long-scale dynamic fluctuation phenomena in freely suspended films is analyzed. We consider isotropic films that, say, can be pulled from bulk smectic A liquid crystals. The key feature of such objects is possibility of bending deformations…

Soft Condensed Matter · Physics 2015-06-23 E. I. Kats , V. V. Lebedev