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Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…
Inspired by protein folding, we explored the construction of three-dimensional structures and machines from one-dimensional chains of simple building blocks. This approach not only allows us to recreate the self-replication mechanism…
Topologically constrained genome-like polymers often double-fold into tree-like configurations, which can be modelled on the level of folded (ring) polymers or on the level of the underlying random trees. For both descriptions, we have…
We generalize previous results on N=1, (3+1)-dimensional superconformal block quiver gauge theories. It is known that the necessary conditions for a theory to be superconformal, i.e. that the beta and gamma functions vanish in addition to…
To any tree on $n$ vertices we associate an $n$-dimensional Lotka-Volterra system with $3n-2$ parameters and, for generic values of the parameters, prove it is superintegrable, i.e. it admits $n-1$ functionally independent integrals. We…
The tree-metric theorem provides a necessary and sufficient condition for a dissimilarity matrix to be a tree metric, and has served as the foundation for numerous distance-based reconstruction methods in phylogenetics. Our main result is…
We study infinite tree and ultrametric matrices, and their action on the boundary of the tree. For each tree matrix we show the existence of a symmetric random walk associated to it and we study its Green potential. We provide a…
It is well known that a set of non-defect matrices can be simultaneously diagonalized if and only if the matrices commute. In the case of non-commuting matrices, the best that can be achieved is simultaneous block diagonalization. Here we…
Ultrametric matrices are a class of covariance matrices that arise in latent tree models. As a parameter space in a statistical model, the set of ultrametric matrices is neither convex nor a smooth manifold. Focus in the literature has…
Ultametrics are an important class of distances used in applications such as phylogenetics, clustering and classification theory. Ultrametrics are essentially distances that can be represented by an edge-weighted rooted tree so that all of…
Owing to success in the data-rich domain of natural images, Transformers have recently become popular in medical image segmentation. However, the pairing of Transformers with convolutional blocks in varying architectural permutations leaves…
Tree structures appear in many fields of the life sciences, including phylogenetics, developmental biology and nucleic acid structures. Trees can be used to represent RNA secondary structures, which directly relate to the function of…
The conception of multi-alphabetical genetics is represented. Matrix forms of the representation of the multi-level system of molecular-genetic alphabets have revealed algebraic properties of this system. These properties are connected with…
The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…
Commutative complex numbers of the form u=x+\alpha y+\beta z+\gamma t in 4 dimensions are studied, the variables x, y, z and t being real numbers. Four distinct types of multiplication rules for the complex bases \alpha, \beta and \gamma…
The classical Fourier transform is, in essence, a way to take data and extract components (in the form of complex exponentials) which are invariant under cyclic shifts. We consider a case in which the components must instead be invariant…
It is well-known that a complex circulant matrix can be diagonalized by a discrete Fourier matrix with imaginary unit $\mathtt{i}$. The main aim of this paper is to demonstrate that a quaternion circulant matrix cannot be diagonalized by a…
In this paper we study the minimum number of reversals needed to transform a unicellular fatgraph into a tree. We consider reversals acting on boundary components, having the natural interpretation as gluing, slicing or half-flipping of…
Consider rectangular matrices over a local ring R. In the previous work we have obtained criteria for block-diagonalization of such matrices, i.e. U A V=A_1\oplus A_2, where U,V are invertible matrices over R. In this short note we extend…
It has recently been shown that any simple (i.e. nonintersecting) polygonal chain in the plane can be reconfigured to lie on a straight line, and any simple polygon can be reconfigured to be convex. This result cannot be extended to tree…