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The topology of large scale structure is studied as a function of galaxy type using the genus statistic. In hydrodynamical cosmological CDM simulations, galaxies form on caustic surfaces (Zeldovich pancakes) then slowly drain onto filaments…

Astrophysics · Physics 2012-08-27 J. Richard Gott , III , Renyue Cen , Jeremiah P. Ostriker

We study the stochastic hydrodynamics of colonies of flagellated swimming cells, typified by multicellular choanoflagellates, which can form both rosette and chainlike shapes. The objective is to link cell-scale dynamics to colony-scale…

Quantitative Methods · Quantitative Biology 2023-07-21 Yonatan Ashenafi , Peter R. Kramer

The Voronoi cell of any atom in a lattice is identical. If atoms are perturbed from their lattice coordinates, then the topologies of the Voronoi cells of the atoms will change. We consider the distribution of Voronoi cell topologies in…

Statistical Mechanics · Physics 2016-06-10 Hannes Leipold , Emanuel A. Lazar , Kenneth A. Brakke , David J. Srolovitz

The 2D flow of a foam confined in a Hele-Shaw cell through a contraction is investigated. Its rheological features are quantified using image analysis, with measurements of the elastic stress, rate of plasticity, and velocity. The behavior…

Soft Condensed Matter · Physics 2015-05-13 Benjamin Dollet

Voronoi Tessellations form an attractive and versatile geometrical asymptotic model for the foamlike cosmic distribution of matter and galaxies. In the Voronoi model the vertices are identified with clusters of galaxies. For a substantial…

Astrophysics · Physics 2007-05-23 Rien van de Weygaert

Soft gels, formed via the self-assembly of particulate organic materials, exhibit intricate multi-scale structures that provides them with flexibility and resilience when subjected to external stresses. This work combines molecular…

Soft Condensed Matter · Physics 2024-04-05 Alexander Smith , Gavin J. Donley , Emanuela Del Gado , Victor M. Zavala

We investigate experimentally and numerically the defect configurations emerging when a cholesteric liquid crystal is confined to a spherical shell. We uncover a rich scenario of defect configurations, some of them non-existent in nematic…

Soft Condensed Matter · Physics 2017-09-13 Alexandre Darmon , Michael Benzaquen , Simon Čopar , Olivier Dauchot , Teresa Lopez-Leon

We investigate the local- and long-range structure of four different space-filling cellular patterns: bubbles in a quasi-2d foam plus Voronoi constructions made around points that are uncorrelated (Poisson patterns), low discrepancy (Halton…

Soft Condensed Matter · Physics 2021-06-16 Anthony T. Chieco , Douglas J. Durian

The Voronoi-based cellular model is highly successful in describing the motion of two-dimensional confluent cell tissues. In the homogeneous version of this model, the energy of each cell is determined solely by its geometric shape and…

Cell Behavior · Quantitative Biology 2018-11-07 Eial Teomy , David A. Kessler , Herbert Levine

Gel electrophoresis is a powerful experimental method to probe the topology of DNA and other biopolymers. While there is a large body of experimental work which allows us to accurately separate different topoisomers of a molecule, a full…

Soft Condensed Matter · Physics 2016-02-17 Davide Michieletto , Davide Marenduzzo , Enzo Orlandini

The root is an important organ of a plant since it is responsible for water and nutrient uptake. Analyzing and modelling variabilities in the geometry and topology of roots can help in assessing the plant's health, understanding its growth…

Graphics · Computer Science 2021-01-26 Guan Wang , Hamid Laga , Jinyuan Jia , Stanley J. Miklavcic , Anuj Srivastava

We investigate the spatial structure of cohesive granular matter with spheres floating at an air-liquid interface that form disordered close packings with pores in between. The interface is slowly lowered in a conical container to uniformly…

Soft Condensed Matter · Physics 2011-04-20 Michael Berhanu , Arshad Kudrolli

The behaviour of elastic structures undergoing large deformations is the result of the competition between confining conditions, self-avoidance and elasticity. This combination of multiple phenomena creates a geometrical frustration that…

Soft Condensed Matter · Physics 2015-05-19 Mokhtar Adda-Bedia , Arezki Boudaoud , Laurent Boué , Stephanie Deboeuf

Liquid crystals can self-organize into a layered smectic phase. While the smectic layers are typically straight forming a lamellar pattern in bulk, external confinement may drastically distort the layers due to the boundary conditions…

We propose a two-scale model to resolve essential features of developmental tissue deformations. The model couples individual cellular behavior to the mechanics at tissue scale. This is realized by a multiphase-field model addressing the…

Soft Condensed Matter · Physics 2025-06-25 Lea Happel , Axel Voigt

Amorphous materials exhibit complex material proprteties with strongly nonlinear behaviors. Below a yield stress they behave as plastic solids, while they start to yield above a critical stress $\Sigma_c$. A key quantity controlling…

Biological Physics · Physics 2020-05-06 Marko Popović , Valentin Druelle , Natalie A. Dye , Frank Jülicher , Matthieu Wyart

The shell structure holds significant importance in various domains such as information dissemination, supply chain management, and transportation. This study focuses on investigating the shell structure of hub and non-hub nodes, which play…

Physics and Society · Physics 2025-01-03 Gaogao Dong , Nannan Sun , Fan Wang , Renaud Lambiotte

We conclude our analysis of bubble divergences in the flat spinfoam model. In [arXiv:1008.1476] we showed that the divergence degree of an arbitrary two-complex Gamma can be evaluated exactly by means of twisted cohomology. Here, we…

General Relativity and Quantum Cosmology · Physics 2012-02-03 Valentin Bonzom , Matteo Smerlak

All liquids are topologically disordered materials; however, the degree of disorder can vary as a result of internal fluctuations in structure and topology. These fluctuations depend on both the composition and temperature of the system.…

Statistical Mechanics · Physics 2018-08-15 Katelyn A. Kirchner , Seong H. Kim , John C. Mauro

We experimentally and theoretically investigate the behavior of Leidenfrost droplets inserted in a Hele-Shaw cell. As a result of the confinement from the two surfaces, the droplet has the shape of a flattened disc and is thermally isolated…