Related papers: From Collapse to Freezing in Random Heteropolymers
Polymer models are used to describe chromatin, which can be folded at different spatial scales by binding molecules. By folding, chromatin generates loops of various sizes. We present here a randomly cross-linked (RCL) polymer model, where…
We study crystal melting in two-dimensional antiferromagnets, by analyzing the statistical mechanics of the six-state clock model on a lattice in which defects (dislocations and disclinations) are allowed to appear. We show that the…
The hydrophobic-polar (HP) model represents proteins as binary strings embedded in lattices, with fold quality measured by an energy score. We prove that the optimal fold energy is not monotonic under concatenation for several standard…
The entanglement entropy of the ground state of a quantum lattice model with local interactions usually satisfies an area law. However, in 1D systems some violations may appear in inhomogeneous systems or in random systems. In our…
We solve a two dimensional model for polymer chain folding in the presence of mechanical pulling force ($f$) exactly using equilibrium statistical mechanics. Using analytically derived expression for the partition function we determine the…
We present results of Monte Carlo computer simulations of a coarse-grained hydrophobic-polar Go-like heteropolymer model and discuss thermodynamic properties and kinetics of an exemplified heteropolymer, exhibiting two-state folding…
Entanglement freezing has been demonstrated existing in various noisy decoherence mechanisms. Here we explore its universality by investigating freezing behavior in a lossless multiparty system, i.e., an $N$-site optical lattice (or…
Using exact enumeration methods and Monte Carlo simulations we study the phase diagram relative to the conformational transitions of a two dimensional diblock copolymer. The polymer is made of two homogeneous strands of monomers of…
Employing numerical linked-cluster expansions (NLCEs) along with exact diagonalizations of finite clusters with periodic boundary condition, we study the energy, specific heat, entropy, and various susceptibilities of the antiferromagnetic…
We report dynamic Monte Carlo simulation on conformational transition of H-shaped branched polymers by varying main chain (backbone) and side chain (branch) length. H-shaped polymers in comparison with equivalent linear polymers exhibit a…
In this work, we report our results on the phase transition of a flexible homopolymer from a stretched chain to a compact globule. The Wang-landau method is used to study the thermodynamic properties of a the chain up to 512 monomers. We…
Reconnection physics at micro-scales is investigated in an electron magnetohydrodynamics frame. A new process of collapse of the neutral current sheet is demonstrated by means of analytical and numerical solutions. It shows how at scales…
We consider the adsorption of a random heteropolymer onto an interface within the model by Garel et al. [1] by taking into account self-interactions between the monomers. Within the replica trick and by using a self-consistent preaveraging…
A new quantitative theory for polyelectrolytes in salt free dilute solutions is developed. Depending on the electrostatic interaction strength, polyelectrolytes in solutions can undergo strong stretching (with polyelectrolyte dimension…
We study random heteropolymer chain with gaussian distribution of kinds of monomers. The long-range correlations between kinds of monomers were introduce. The mean-field analysis of such heteropolymer indicates the existence of infinite…
We investigate the critical scaling of the spin-1/2 antiferromagnet on the square lattice in the easy-plane (XXZ) regime, via numerical measurements of the entanglement entropy constructed from the zeroes of a polynomial ring. We relate…
A model for a monolayer of two types of particles spontaneously forming ordered patterns is studied by a mesoscopic theory and by MC simulations. We assume hard-cores of the same size for both components, short-range attraction long-range…
We investigate the sequence-dependent properties of proteins that determine the dual requirements of stability of the native state and its kinetic accessibility using simple cubic lattice models. Three interaction schemes are used to…
In this article the configurational space of two simple protein models consisting of polymers composed of a periodic sequence of four different kinds of monomers is studied as a function of temperature. In the protein models, hydrogen bond…
We study the phase transition in the holographic entanglement entropy for various confining models. This transition occurs for the entanglement entropy of a strip at a critical value of the strip width. Our main interest is to examine the…