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The fluctuation spectrum of a quasi-spherical vesicle with active membrane proteins is calculated. The activity of the proteins is modeled as the proteins pushing on their surroundings giving rise to non-local force distributions. Both the…

Soft Condensed Matter · Physics 2009-11-11 Michael A. Lomholt

Living cells respond to mechanical changes in the matrix surrounding them by applying contractile forces that are in turn transmitted to distant cells. We calculate the mechanical work that each cell performs in order to deform the matrix,…

Soft Condensed Matter · Physics 2021-08-17 Chaviva Sirote , Yair Shokef

In this article an anisotropic interaction model avoiding collisions is proposed. Starting point is a general isotropic interacting particle system, as used for swarming or follower-leader dynamics. An anisotropy is induced by rotation of…

Analysis of PDEs · Mathematics 2020-08-17 Claudia Totzeck

Lipid membrane deformations have been predicted to lead to indirect forces between the objects that induce these deformations. Recent experimental measurements have found an attractive interaction between spherical particles that all induce…

Soft Condensed Matter · Physics 2024-11-27 Ali Azadbakht , Daniela J. Kraft

Plasma membrane tubes are ubiquitous in cellular membranes and in the membranes of intracellular organelles. They play crucial roles in trafficking, ion transport, and cellular motility. The formation of plasma membrane tubes can be due to…

Soft Condensed Matter · Physics 2022-06-09 Arijit Mahapatra , Padmini Rangamani

Folding and aggregation of proteins, the interaction between proteins and membranes, as well as the adsorption of organic soft matter to inorganic solid substrates belong to the most interesting challenges in understanding structure and…

Soft Condensed Matter · Physics 2007-12-06 Michael Bachmann , Wolfhard Janke

The interaction of obliquely incident surface gravity waves with a vertical flexible permeable membrane wave barrier is investigated in the context of three-dimensional linear wave-structure interaction theory. A general formulation for…

Fluid Dynamics · Physics 2016-04-20 Santanu Koley , Trilochan Sahoo

We develop the theory of antisymmetric Raman response, defined as the difference between the Raman signals of two scattering geometries related by an exchange of mutually perpendicular incoming and the outgoing photon polarizations. Such…

Strongly Correlated Electrons · Physics 2026-05-04 Mattia Udina , Indranil Paul

Gaining access to the cell interior is fundamental for many applications, such as electrical recording, drug and biomolecular delivery. A very promising technique consists of culturing cells on nano/micro pillars. The tight adhesion and…

We explore the interplay between the protein-protein interactions network and the expression of the interacting proteins. It is shown that interacting proteins are expressed in significantly more similar cellular concentrations. This is…

Molecular Networks · Quantitative Biology 2007-05-23 Shai Carmi , Erez Y. Levanon , Shlomo Havlin , Eli Eisenberg

In this perspective we describe the critical role membranes play in modulating the structures of the Amyloid Precursor Proteins to produce the peptides involved in the Alzheimer's disease. Some of the key concepts related to protein…

Soft Condensed Matter · Physics 2014-07-08 John E. Straub , D. Thirumalai

Biomolecular condensates organize biochemical processes by spatially concentrating molecules while allowing for dynamic exchange with their surroundings. However, transport across their interface can be strongly attenuated, leading to…

Biological Physics · Physics 2026-03-27 Oihan Joyot , Zoé Ferrand , Fernando Muzzopappa , Pierre Weiss , Fabian Erdel

For cellular functions like division and polarization, protein pattern formation driven by NTPase cycles is a central spatial control strategy. Operating far from equilibrium, no general theory links microscopic reaction networks and…

Biological Physics · Physics 2024-10-01 Henrik Weyer , Tobias A. Roth , Erwin Frey

An accurate description of the structure and dynamics of interfacial water is essential for phospholipid membranes, since it determines their function and their interaction with other molecules. Here we consider water confined in stacked…

Soft Condensed Matter · Physics 2018-11-16 Sotiris Samatas , Carles Calero , Fausto Martelli , Giancarlo Franzese

Optical systems breaking Lorentz reciprocity have attracted broad attention due to their intriguing physics and applications. Nonreciprocal metasurfaces can enable one-way light transmission and reflection with essential applications in…

Optics · Physics 2024-11-26 Zheng Yang , Wanyue Xiao , Hengzhi Li , Hao Pan , Shubo Wang

Within a closed system, physical interactions are reciprocal. However, the effective interaction between two entities of an open system may not obey reciprocity. Here, we describe a non-reciprocal interaction between nanoparticles which is…

Optics · Physics 2024-02-02 Amir M. Jazayeri , Sohila Abdelhafiz , Aristide Dogariu

We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

Biological Physics · Physics 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

Motivated by the anisotropic interactions between fish, we implement spatially anisotropic and therefore non-reciprocal interactions in the 2D Ising model. First, we show that the model with non-reciprocal interactions alters the system…

Soft Condensed Matter · Physics 2023-05-10 Daniel S. Seara , Akash Piya , A. Pasha Tabatabai

Protein-protein interactions (protein functionalities) are mediated by water, which compacts individual proteins and promotes close and temporarily stable large-area protein-protein interfaces. Proteins are peptide chains decorated by amino…

Soft Condensed Matter · Physics 2008-02-26 J. C. Phillips

A nematic membrane is a sheet with embedded orientational order, which can occur in biological cells, liquid crystal films, manufactured materials, and other soft matter systems. By formulating the free energy of nematic films using tensor…

Soft Condensed Matter · Physics 2009-11-13 John R. Frank , Mehran Kardar