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We investigate the folding and forced-unbinding transitions of adsorbed semiflexible polymer chains using theory and simulations. These processes describe biologically relevant phenomena that include adhesive interactions between proteins…

Soft Condensed Matter · Physics 2007-05-23 V. Barsegov , D. Thirumalai

For the estimation of transition points of finite elastic, flexible polymers with chain lengths from $13$ to $309$ monomers, we compare systematically transition temperatures obtained by the Fisher partition function zeros approach with…

Data Analysis, Statistics and Probability · Physics 2014-08-20 Julio C. S. Rocha , Stefan Schnabel , David P. Landau , Michael Bachmann

We study the mechanical properties of semiflexible polymers when the contour length of the polymer is comparable to its persistence length. We compute the exact average end-to-end distance and shape of the polymer for different boundary…

Biomolecules · Quantitative Biology 2013-05-29 Yuko Hori , Ashok Prasad , Jane' Kondev

We study the adsorption of polymer chains on a fluctuating surface. Physical examples are provided by polymer adsorption at the rough interface between two non-miscible liquids, or on a membrane. In a mean-field approach, we find that the…

Condensed Matter · Physics 2009-10-22 T. Garel , Mehran Kardar , H. Orland

We study the interaction problem of a linear polymer chain, floating in fractal containers that belong to the three-dimensional Sierpinski gasket (3D SG) family of fractals, with a surface-adsorbed linear polymer chain. Each member of the…

Statistical Mechanics · Physics 2009-11-11 Ivan Zivic

Using transfer matrix and finite-size scaling methods, we study the thermodynamic behavior of a lattice gas with two kinds of particles on the square lattice. Only excluded volume interactions are considered, so that the model is athermal.…

Statistical Mechanics · Physics 2015-09-03 T. J. Oliveira , J. F. Stilck

We deduce the qualitative phase diagram of a long flexible neutral polymer chain immersed in a poor solvent near an attracting surface using phenomenological arguments. The actual positions of the phase boundaries are estimated numerically…

Statistical Mechanics · Physics 2009-11-07 R. Rajesh , Deepak Dhar , Debaprasad Giri , Sanjay Kumar , Yashwant Singh

On the basis of the thermodynamic theory of the excluded volume effects, we show that the size exponent varies abruptly, depending on the change of the segment concentration. For linear polymers, the exponent changes discontinuously from…

Soft Condensed Matter · Physics 2024-03-04 Kazumi Suematsu , Haruo Ogura , Seiichi Inayama , Toshihiko Okamoto

In a recent article on stretched polymers in a poor solvent by Grassberger and Hsu \cite{grassberger2002a-a} questions were raised as to the conclusions that can be drawn from currently proposed scaling theory for a single polymer in…

Statistical Mechanics · Physics 2007-05-23 A. L. Owczarek , T. Prellberg

A simple two dimensional model of a phase growing on a substrate is introduced. The model is characterized by an adsorption rate q, and a desorption rate p. It exhibits a wetting transition which may be viewed as an unbinding transition of…

Statistical Mechanics · Physics 2009-10-30 Haye Hinrichsen , Roberto Livi , David Mukamel , Antonio Politi

The adsorption of an ideal heteropolymer loop at a potential point well is investigated within the frameworks of a standard random matrix theory. On the basis of semi-analytical/semi-numerical approach the histogram of transition points for…

Disordered Systems and Neural Networks · Physics 2009-10-31 A. Naidenov , S. Nechaev

Polymers in confined spaces are compressed and have reduced conformational entropy, and will partially or fully escape from confinement if conditions are suitable. This is in particular the case for a polymer grafted in a pore. The escape…

Soft Condensed Matter · Physics 2024-08-05 CJ Bradly , EJ Janse van Rensburg

We consider an inextensible, semiflexible polymer or worm-like chain which is confined in the transverse direction by a parabolic potential and subject to a longitudinal force at the ends, so that the polymer is stretched out and…

Soft Condensed Matter · Physics 2015-05-28 Theodore W. Burkhardt

Diffusion properties of a self-avoiding polymer embedded in regularly distributed obstacles with spacing a=20 and confined in two dimensions is studied numerically using the extended bond fluctuation method which we have developed recently.…

Soft Condensed Matter · Physics 2009-10-31 Ryuzo Azuma , Hajime Takayama

We consider two-dimensional system of particles localized on randomly distributed sites of squared lattice with anisotropic transfer matrix elements between localized sites. By summing of "diffusion ladder" and "cooperon ladder" type…

Strongly Correlated Electrons · Physics 2009-10-31 E. A. Dorofeev , S. I. Matveenko

Conformations of partially or fully adsorbed semiflexible polymer chains are studied varying both contour length $L$, chain stiffness, $\kappa$, and the strength of the adsorption potential over a wide range. Molecular Dynamics simulations…

Soft Condensed Matter · Physics 2019-10-02 Andrey Milchev , Kurt Binder

We show that the structural properties and phase behavior of a self-avoiding polymer chain on adhesive substrate, subject to pulling at the chain end, can be obtained by means of a Grand Canonical Ensemble (GCE) approach. We derive…

Soft Condensed Matter · Physics 2009-04-05 S. Bhattacharya , V. G. Rostiashvili , A. Milchev , T. A. Vilgis

Motivated by renewed interest in the physics of branched polymers, we present here a complete characterization of the connectivity and spatial properties of $2$ and $3$-dimensional single-chain conformations of randomly branching polymers…

Soft Condensed Matter · Physics 2020-03-23 Irene Adroher-Benítez , Angelo Rosa

We study a lattice model of a single magnetic polymer chain, where Ising spins are located on the sites of a lattice self-avoiding walk in $d=2$. We consider the regime where both conformations and magnetic degrees of freedom are dynamic,…

Statistical Mechanics · Physics 2021-11-17 Kamilla Faizullina , Ilya Pchelintsev , Evgeni Burovski

A problem of the crossover from percolation to diffusion transport is considered. A general scaling theory is proposed. It introduces phenomenologically four critical exponents which are connected by two equations. One exponent is…

Condensed Matter · Physics 2009-10-31 D. N. Tsigankov , A. L. Efros
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