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Performance of clustering algorithms is evaluated with the help of accuracy metrics. There is a great diversity of clustering algorithms, which are key components of many data analysis and exploration systems. However, there exist only few…

Data Structures and Algorithms · Computer Science 2019-02-18 Artem Lutov , Mourad Khayati , Philippe Cudré-Mauroux

We present a new type of cluster algorithm that strongly reduces critical slowing down in simulations of vertex models. Since the clusters are closed paths of bonds, we call it the {\em loop algorithm}. The basic steps in constructing a…

Condensed Matter · Physics 2009-01-23 H. G. Evertz , G. Lana , M. Marcu

We review the background of the cluster algorithms in Monte Carlo simulation of statistical physics problems. One of the first such successful algorithm was developed by Swendsen and Wang eight years ago. In contrast to the local…

Condensed Matter · Physics 2007-05-23 Jian-Sheng Wang

The present work proposes the concept of induced percolation over multiple-object systems, so that features such as the number of merged clusters can be used as a relevant measurement. The suggested approach involves the expansion of the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Luciano da Fontoura Costa

A novel and intuitive nearest neighbours based clustering algorithm is introduced, in which a cluster is defined in terms of an equilibrium condition which balances its size and cohesiveness. The formulation of the equilibrium condition…

Machine Learning · Computer Science 2025-03-31 David P. Hofmeyr

We present an algorithm for cluster dynamics to efficiently simulate large systems on MIMD parallel computers with large numbers of processors. The method divides physical space into rectangular cells which are assigned to processors and…

High Energy Physics - Lattice · Physics 2009-10-22 Mike Flanigan , Pablo Tamayo

We defined exponential maps with one parameter, associated with geodesics on the parameter surface. By group theory we proposed a formula of the critical points, which is a direct sum of the Lie subalgebras at the critical temperature. We…

General Physics · Physics 2009-12-17 You-Gang Feng

We present an unsupervised data processing workflow that is specifically designed to obtain a fast conformational clustering of long molecular dynamics simulation trajectories. In this approach we combine two dimensionality reduction…

Chemical Physics · Physics 2023-08-09 Simon Hunkler , Kay Diederichs , Oleksandra Kukharenko , Christine Peter

We study the dynamic critical behavior of the worm algorithm for the two- and three-dimensional Ising models, by Monte Carlo simulation. The autocorrelation functions exhibit an unusual three-time-scale behavior. As a practical matter, the…

Statistical Mechanics · Physics 2008-11-26 Youjin Deng , Timothy M. Garoni , Alan D. Sokal

The two-dimensional Ising model is studied by performing computer simulations with one of the Monte Carlo algorithms - the worm algorithm. The critical temperature T_C of the phase transition is calculated by the usage of the critical…

Statistical Mechanics · Physics 2015-02-02 Marcin Szyniszewski

Clustering is a technique for the analysis of datasets obtained by empirical studies in several disciplines with a major application for biomedical research. Essentially, clustering algorithms are executed by machines aiming at finding…

Quantitative Methods · Quantitative Biology 2024-09-30 Diego Ulisse Pizzagalli , Santiago Fernandez Gonzalez , Rolf Krause

We investigate the estimation of multivariate extreme models with a discrete spectral measure using spherical clustering techniques. The primary contribution involves devising a method for selecting the order, that is, the number of…

Methodology · Statistics 2025-02-20 Shiyuan Deng , He Tang , Shuyang Bai

Simulating non-wetting fluid invasion in volumetric images of porous materials is of broad interest in applications as diverse as electrochemical devices and CO2 sequestration. Among available methods, image-based algorithms offer much…

Fluid Dynamics · Physics 2025-01-07 Jeff T Gostick , Niloofar Misaghian , Ashkan Irannezhad , Benzhong Zhao

Within a general cluster framework, we discuss the loop-algorithm, a new type of cluster algorithm that reduces critical slowing down in vertex models and in quantum spin systems. We cover the example of the 6-vertex model in detail. For…

Condensed Matter · Physics 2007-05-23 H. G. Evertz , M. Marcu

A cluster Monte Carlo method for systems of classical spins with purely dipolar couplings is presented. It is tested and applied for finite arrays of perpendicular Ising dipoles on the triangular lattice. This model is a modification with…

Statistical Mechanics · Physics 2009-11-07 Ulrich K. Roessler

We demonstrate that a series of procedures for increasing the efficiency of transition matrix calculations can be realized by integrating the standard single-spin flip transition matrix method with global cluster flipping techniques. Our…

Statistical Mechanics · Physics 2019-03-19 David Yevick , Yong Hwan Lee

Here we present a quantum algorithm for clustering data based on a variational quantum circuit. The algorithm allows to classify data into many clusters, and can easily be implemented in few-qubit Noisy Intermediate-Scale Quantum (NISQ)…

Quantum Physics · Physics 2024-01-08 Pablo Bermejo , Roman Orus

We extend the program initiated in [T. Werlang et al., Phys. Rev. Lett. 105, 095702 (2010)] in several directions. Firstly, we investigate how useful quantum correlations, such as entanglement and quantum discord, are in the detection of…

Quantum Physics · Physics 2015-05-27 T. Werlang , G. A. P. Ribeiro , Gustavo Rigolin

Data analysis plays an indispensable role for value creation in industry. Cluster analysis in this context is able to explore given datasets with little or no prior knowledge and to identify unknown patterns. As (big) data complexity…

Machine Learning · Computer Science 2021-06-25 Marc Wegmann , Domenique Zipperling , Jonas Hillenbrand , Jürgen Fleischer

We develop and implement an algorithm for the quantitative characterization of cluster dynamics occurring on cellular automata defined on an arbitrary structure. As a prototype for such systems we focus on the Ising model on a finite…

Statistical Mechanics · Physics 2010-09-14 Elena Agliari , Mario Casartelli , Edoardo Vivo