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Under dehydration conditions, amphipathic Late Embryogenesis Abundant (LEA) proteins fold spontaneously from a random conformation into alpha-helical structures and this transition is promoted by the presence of membranes. To gain insight…

Biological Physics · Physics 2012-06-27 Sergey Pogodin , Nigel K. H. Slater , Vladimir A. Baulin

In this paper, based on the idea of self-adjusting steepness based schemes[5], a two-dimensional calculation method of steepness parameter is proposed, and thus a two-dimensional self-adjusting steepness based limiter is constructed. With…

Computational Engineering, Finance, and Science · Computer Science 2021-01-19 Zhiwei He

We study the phase diagram of a system of spherical particles interacting in three dimensions through a potential consisting of a strict hard core plus a linear repulsive shoulder at larger distances. The phase diagram (obtained…

Statistical Mechanics · Physics 2009-10-31 E. A. Jagla

A two-dimensional model of interacting plaquettes is studied by means of the real space renormalization group approach. Interactions between the plaquettes are mediated solely by spin excitations on the plaquettes. Depending on the…

Strongly Correlated Electrons · Physics 2009-12-14 A. Fledderjohann , A. Klümper , K. H. Mütter

We propose a stroboscopic method to dynamically decouple the effects of two-body atom-atom interactions for ultracold atoms, and realize a system dominated by elastic three-body interactions. Using this method, we show that it is possible…

Quantum Gases · Physics 2014-11-06 K. W. Mahmud , E. Tiesinga , P. R. Johnson

We derive the three-loop order renormalization group equations that describe the flat phase of polymerized membranes within the modified minimal subtraction scheme, following the pioneering one-loop order computation of Aronovitz and…

Statistical Mechanics · Physics 2022-02-03 S. Metayer , D. Mouhanna , S. Teber

In recent large scale Monte-Carlo simulations of various models of Theta-point polymers in three dimensions Grassberger and Hegger found logarithmic corrections to mean field theory with amplitudes much larger than the universal amplitudes…

Statistical Mechanics · Physics 2009-10-31 Johannes Hager , Lothar Sch"afer

We study the irreversible adsorption of patchy particles on substrates in the limit of advective mass transport. Recent numerical results show that the interface roughening depends strongly on the particle attributes, such as, patch-patch…

Statistical Mechanics · Physics 2015-05-20 N. A. M. Araújo , C. S. Dias , M. M. Telo da Gama

To bridge the gap between single/isolated pore systems to multi-pore systems, such as membranes/electrodes, we studied an array of nanochannels with varying interchannel spacing that controlled the degree of channel communication. Instead…

Fluid Dynamics · Physics 2015-01-29 Yoav Green , Sinwook Park , Gilad Yossifon

In contact mechanics computation, the constraint conditions on the contact surfaces are typically enforced by the Lagrange multiplier method, resulting in a saddle point system. Given that the saddle point matrix is indefinite, solving…

Numerical Analysis · Mathematics 2024-09-24 Xiaoyu Duan , Hengbin An

Supported lipid membranes are useful and important model systems for studying cell membrane properties and membrane mediated processes. One attractive application of supported membranes is the design of phantom cells exhibiting well defined…

Soft Condensed Matter · Physics 2011-10-04 Oded Farago

The density crossover scaling of various thermodynamic properties of solutions and melts of self-avoiding and highly flexible polymer chains without chain intersections confined to strictly two dimensions is investigated by means of…

Soft Condensed Matter · Physics 2012-09-03 N. Schulmann , H. Meyer , P. Polińska , J. Baschnagel , J. P. Wittmer

Evaluating accessible conformational space is computationally expensive and thermal motions are partly neglected in computer models of molecular interactions. This produces error into the estimates of binding strength. We introduce a method…

Quantitative Methods · Quantitative Biology 2016-12-13 Riku Hakulinen , Santeri Puranen

We study how the thermodynamic properties of the Triangular Plaquette Model (TPM) are influenced by the addition of extra interactions. The thermodynamics of the original TPM is trivial, while its dynamics is glassy, as usual in Kinetically…

Disordered Systems and Neural Networks · Physics 2016-03-23 Silvio Franz , Giacomo Gradenigo , Stefano Spigler

The interaction of fluid membranes with a scaffold, which can be a planar surface or a more complex structure, is intrinsic to a number of systems - from artificial supported bilayers and vesicles to cellular membranes. In principle, these…

Soft Condensed Matter · Physics 2014-05-07 Daniel Schmidt , Cornelia Monzel , Timo Bihr , Rudolf Merkel , Udo Seifert , Kheya Sengupta , Ana-Sunčana Smith

Polymer association at liquid-liquid interfaces is a promising way to spontaneously obtain soft self-healing membranes. In the case of reversible bonding between two polymers, the macromolecules are mobile everywhere within the membrane and…

Topological phases of quantum matter defy characterization by conventional order parameters but can exhibit quantized electro-magnetic response and/or protected surface states. We examine such phenomena in a model for three-dimensional…

Strongly Correlated Electrons · Physics 2012-10-03 Ara Go , William Witczak-Krempa , Gun Sang Jeon , Kwon Park , Yong Baek Kim

We study quenched disordered polymerized membranes in their flat phase by means of a three-loop perturbative analysis performed in dimension $D = 4-\epsilon$. We derive the renormalization group equations at this order and solve them up to…

Disordered Systems and Neural Networks · Physics 2022-12-14 S. Metayer , D. Mouhanna

Biopolymers are characterized by heterogeneous interactions, and usually perform their biological tasks forming contacts within domains of limited size. Combining polymer theory with a replica approach, we study the scaling properties of…

Biomolecules · Quantitative Biology 2015-08-05 Guido Tiana

The statistical mechanics of flexible surfaces with internal elasticity and shape fluctuations is summarized. Phantom and self-avoiding isotropic and anisotropic membranes are discussed, with emphasis on the universal negative Poisson ratio…

Soft Condensed Matter · Physics 2016-11-23 Mark J. Bowick