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In this work we analyze the possibility that soliton dynamics in a simple nonlinear model allows functionally relevant predictions of the behaviour of DNA. This suggestion was first put forward by Salerno [Phys. Rev. A, vol. 44, p. 5292…

Genomics · Quantitative Biology 2009-11-13 Sara Cuenda , Angel Sanchez , Niurka R. Quintero

A study of high-order solitons in three nonlocal nonlinear Schr\"{o}dinger equations is presented, which includes the \PT-symmetric, reverse-time, and reverse-space-time nonlocal nonlinear Schr\"{o}dinger equations. General high-order…

Pattern Formation and Solitons · Physics 2018-02-16 Bo Yang , Yong Chen

Solitons - localized wave packets that travel without spreading - play a central role in understanding transport and properties of nonlinear systems, from optical fibers to fluid dynamics. In quantum many-body systems, however, such robust…

Quantum Physics · Physics 2025-07-18 Aron Kerschbaumer , Jean-Yves Desaules , Marko Ljubotina , Maksym Serbyn

We consider a lattice equation (Salerno model) combining onsite self-focusing and intersite self-defocusing cubic terms, which may describe a Bose-Einstein condensate of dipolar atoms trapped in a strong periodic potential. In the continuum…

Pattern Formation and Solitons · Physics 2007-05-23 J. Gomez-Gardenes , B. A. Malomed , L. M. Floria , A. R. Bishop

We study the propagation of discrete solitons on chains of coupled optical waveguides where finite networks of waveguides are inserted at some points. By properly selecting the topology of these networks, it is possible to control the…

Statistical Mechanics · Physics 2007-05-23 R. Burioni , D. Cassi , P. Sodano , A. Trombettoni , A. Vezzani

A chain of interacting particles subject also to a nonlinear on-site potential admits stable soliton-like configurations : static kinks. The linear normal-modes around such a kink contain a discrete set of localized, gap-separated modes.…

Quantum Physics · Physics 2010-02-02 H. Landa

Dynamics of a chain of interacting parity-time invariant nonlinear dimers is investigated. A dimer is built as a pair of coupled elements with equal gain and loss. A relation between stationary soliton solutions of the model and solitons of…

Solitons, which describe the propagation of concentrated beams of light through nonlinear media, can exhibit a variety of behaviors as a result of the intrinsic dissipation, diffraction, and the nonlinear effects. One of these phenomena,…

Pattern Formation and Solitons · Physics 2018-08-01 Jaime Cisternas , Tony Albers , Günter Radons

A collective coordinate theory is develop for soliton ratchets in the damped discrete sine-Gordon model driven by a biharmonic force. An ansatz with two collective coordinates, namely the center and the width of the soliton, is assumed as…

Pattern Formation and Solitons · Physics 2015-01-21 B. Sánchez-Rey , N. R. Quintero , J. Cuevas-Maraver , M. A. Alejo

We construct families of one-dimensional (1D) stable solitons in two-component $\mathcal{PT}$-symmetric systems with spin-orbit coupling (SOC) and quintic nonlinearity, which plays the critical role in 1D setups. The system models light…

Optics · Physics 2022-03-02 Gennadiy Burlak , Zhaopin Chen , Boris A. Malomed

A novel approach to protein folding dynamics is presented. We suggest that folding of protein may be mediated via interaction with solitons which propagate along the molecular chain. A simple toy model is presented in which a Sine-Gordon…

Condensed Matter · Physics 2007-05-23 S. Caspi , E. Ben-Jacob

We investigate the scattering of elastic waves off a disordered region described by a one-dimensional random-phase sine-Gordon model. The collective pinning results in an effective static disorder potential with universal and non-Gaussian…

Disordered Systems and Neural Networks · Physics 2021-07-01 Tsuyoshi Yamamoto , Leonid I. Glazman , Manuel Houzet

We report on the experimental observation of solitons propagating along a torus of fluid. We show that such a periodic system leads to significant differences compared to the classical plane geometry. In particular, we highlight the…

Pattern Formation and Solitons · Physics 2023-09-29 Filip Novkoski , Chi-Tuong Pham , Eric Falcon

Topological defects in low-dimensional non-linear systems feature a sliding-to-pinning transition of relevance for a variety of research fields, ranging from biophysics to nano- and solid-state physics. We find that the dynamics after a…

Quantum Physics · Physics 2020-08-12 L. Timm , H. Weimer , L. Santos , T. E. Mehlstäubler

We find that the modified sine-Gordon equation belonging to the class of the soliton equations describes the propagation of extremely short transverse acoustic pulses through the low-temperature crystal containing paramagnetic impurities…

Exactly Solvable and Integrable Systems · Physics 2008-03-11 S. V. Sazonov , N. V. Ustinov

In the present work, we study, by means of a one-dimensional lattice model, the collective excitations corresponding to intra molecular ones of a chain like proteins. It is shown that such excitations are described by the Nonlinear…

Pattern Formation and Solitons · Physics 2009-05-30 E. Villagran , J. Socorro , Ricardo Garcia-Salcedo , M. Aguero

We study topological solitary waves (kinks and antikinks) in a nonlinear one-dimensional Klein-Gordon chain with the on-site potential of a double-Morse type. This chain is used to describe the collective proton dynamics in…

Pattern Formation and Solitons · Physics 2009-11-07 V. M. Karpan , Y. Zolotaryuk , P. L. Christiansen , A. V. Zolotaryuk

Droplet solitons are a strongly nonlinear, inherently dynamic structure in the magnetization of ferromagnets, balancing dispersion (exchange energy) with focusing nonlinearity (strong perpendicular anisotropy). Large droplet solitons have…

Pattern Formation and Solitons · Physics 2015-06-29 L. D. Bookman , M. A. Hoefer

A model of two coupled Ablowitz-Ladik (AL) lattices is introduced. While the system as a whole is not integrable, it admits reduction to the integrable AL model for symmetric states. Stability and evolution of symmetric solitons are studied…

Pattern Formation and Solitons · Physics 2009-11-07 Boris A. Malomed , Jianke Yang

Transport of rodlike particles in confinement environments of macromolecular networks plays crucial roles in many important biological processes and technological applications. The relevant understanding has been limited to thin rods with…