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As a first step to understanding the role of molecular or chemical polydispersity in self-assembly, we put forward a coarse-grained model that describes the spontaneous formation of quasi-linear polymers in solutions containing two…

Soft Condensed Matter · Physics 2015-05-19 Sara Jabbari-Farouji , Paul van der Schoot

A co-polycondensation reaction is discussed analytically and by Monte-Carlo simulations where two reactive units compete for reactions with an alternating third reactive unit, whereby irreversible reactions replace bonds which are able to…

Soft Condensed Matter · Physics 2021-05-26 Michael Lang , Frank Böhme

The collapse of flexible polyelectrolytes in a solution of multivalent counterions is studied by means of a two state model. The states correspond to rod-like and spherically collapsed conformations respectively. We focus on the very dilute…

Soft Condensed Matter · Physics 2009-10-31 Francisco J. Solis , Monica Olvera de la Cruz

We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to two parallel walls. The force $f$ exerted on the polymer is measured as a function of the separation $R$ between the walls. For unknotted…

Statistical Mechanics · Physics 2009-11-07 Oded Farago , Yacov Kantor , Mehran Kardar

We study the collapse of two-dimensional polymers, via an O($n$) model on the square lattice that allows for dilution, bending rigidity and short-range monomer attractions. This model contains two candidates for the theta point,…

Mathematical Physics · Physics 2016-09-12 Eric Vernier , Jesper Lykke Jacobsen , Hubert Saleur

Structural and thermodynamic properties of the model solution containing charged oligomers and the equivalent number of counterions were studied by means of the canonical Monte Carlo simulation technique. The oligomers are represented as…

Soft Condensed Matter · Physics 2012-02-21 T. Sajevic , J. Rescic , V. Vlachy

Charge carrier localization in extended atomic systems has been described previously as being driven by disorder, point defects or distortions of the ionic lattice. Here we show for the first time by means of first-principles computations…

Mesoscale and Nanoscale Physics · Physics 2016-05-11 Vojtěch Vlček , Helen R. Eisenberg , Gerd Steinle-Neumann , Daniel Neuhauser , Eran Rabani , Roi Baer

We investigate the crystallization of a single, flexible homopolymer chain using transition path sampling (TPS). The chain consists of N identical spherical monomers evolved according to Langevin dynamics. While neighboring monomers are…

Soft Condensed Matter · Physics 2016-08-17 Christian Leitold , Christoph Dellago

Entanglement asymmetry provides a quantitative measure of symmetry breaking in many-body quantum states. Focusing on inhomogeneous $U(1)$ charges, such as dipole and multipole moments, we show that the typical asymmetry is bounded by a…

Statistical Mechanics · Physics 2026-04-10 Lorenzo Gotta , Filiberto Ares , Sara Murciano

Various phase transitions in models for coupled charge-density waves are investigated by means of the $\epsilon$-expansion, mean-field theory, and Monte Carlo simulations. At zero temperature the effective action for the system with…

Strongly Correlated Electrons · Physics 2009-11-10 Minchul Lee , Eun-Ah Kim , Jong Soo Lim , M. Y. Choi

The formation of coacervates through phase separation of oppositely charged polyelectrolytes (PEs) is critical for understanding biological condensates and developing responsive materials. Traditionally, coacervates are viewed as spherical…

Soft Condensed Matter · Physics 2024-12-23 Jiaxing Yuan , Hajime Tanaka

In this paper, we employ Molecular Dynamics computer simulations to study and compare the statics and dynamics of linear and circular (ring) polymer chains in entangled solutions of different densities. While we confirm that linear chain…

Soft Condensed Matter · Physics 2016-02-17 Negar Nahali , Angelo Rosa

Patchy colloidal platelets with convex, non-spherical shapes have been realized with different materials at length scales ranging from nanometers to microns. While the assembly of these hard shapes tends to maximize edge-to-edge contacts,…

Soft Condensed Matter · Physics 2020-04-22 Carina Karner , Christoph Dellago , Emanuela Bianchi

Multiple loop formation in polymer macromolecules is an important feature of the chromatin organization and DNA compactification in the nuclei. We analyze the size and shape characteristics of complex polymer structures, containing in…

Soft Condensed Matter · Physics 2015-04-20 Viktoria Blavatska , Ralf Metzler

The fluids and polymers have different fundamental symmetries. Namely, the Lagrangian relabeling symmetry of fluids is absent for polymers (while the translational and rotational symmetries are still present). This fact results in…

Fluid Dynamics · Physics 2016-09-14 A. Bershadskii

Atomic collapse is a phenomenon inherent to relativistic quantum mechanics where electron states dive in the positron continuum for highly charged nuclei. This phenomenon was recently observed in graphene. Here we investigate a novel…

Mesoscale and Nanoscale Physics · Physics 2019-09-04 Robbe Van Pottelberge , Dean Moldovan , S. P. Milovanovic , Francois M. Peeters

Quasicrystals (QCs) are a class of aperiodic ordered structures that emerge in various systems, from metallic alloys to soft matter and driven non-equilibrium systems. Within a mesoscale theory based on slowly-varying complex amplitudes for…

Materials Science · Physics 2025-09-12 Marcello De Donno , Luiza Angheluta , Marco Salvalaglio

We present an extremely simplified model of multiple-domains polymer stretching in an atomic force microscopy experiment. We portray each module as a binary set of contacts and decompose the system energy into a harmonic term (the…

Biomolecules · Quantitative Biology 2008-01-20 Carlo Guardiani , Franco Bagnoli

The formation of chain-folded structures from the melt is observed in molecular dynamics simulations resembling the lamellae of polymer crystals. Crystallization and subsequent melting temperatures are related linearly to the inverse…

Soft Condensed Matter · Physics 2009-10-31 Hendrik Meyer , Florian Mueller-Plathe

We analyze, by means of an RPA calculation, the conditions under which a mixture of oppositely charged polyelectrolytes can micro-segregate in the neighborhood of a charged surface creating a layered structure. A number of stable layers can…

Soft Condensed Matter · Physics 2009-10-31 F. J. Solis , M. Olvera de la Cruz
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