Related papers: Solitons and 1/f Noise in Molecular Chains
Davydov's model of solitons in alpha-helix protein chains is shown to display features of self-organized criticality (SOC), i.e., power law behaviour of correlations in space and 1/f-noise, as a consequence of considering random peptide…
We investigate some aspects of the soliton dynamics in an alpha-helical protein macromolecule within the steric Davydov-Scott model. Our main objective is to elucidate the important role of the helical symmetry in the formation, stability…
I discuss the digital disorder introduced by Rosu and Canessa [Phys. Rev. E 47, R3818 (1993)] in the Davydov model of energy diffusion along \alpha-helix protein chains. The digitally disordered Davydov beta kinks display self-organized…
We consider the Davydov model of {\alpha}-helix protein chain with both exciton-exciton and excitonphonon couplings and investigate on the evolution of elliptic solitons. In the discrete regime of the adiabatic limit, we analytically and…
Biological order provided by $\alpha$-helical secondary protein structures is an important resource exploitable by living organisms for increasing the efficiency of energy transport. In particular, self-trapping of amide I energy quanta by…
A model for soliton dynamics on a hydrogen-bond network in helical proteins is proposed. It employs in three dimensions the formalism of fully integrable Toda lattices which admits phonons as well as solitons along the hydrogen-bonds of the…
We study the effects of the sequence on the propagation of nonlinear excitations in simple models of DNA, and how those effects are modified by noise. Starting from previous results on soliton dynamics on lattices defined by aperiodic…
The presence of $1/f$ noise, also known as pink noise, is a well-established phenomenon in biological neural networks, and is thought to play an important role in information processing in the brain. In this study, we find that such $1/f$…
We present a broad review of 1/f noise observations in the heliosphere, and discuss and complement the theoretical background of generic 1/f models as relevant to NASA's PUNCH mission. First observed in the voltage fluctuations of vacuum…
We consider six different secondary structures of proteins and construct two types of Go-type off-lattice models: with the steric constraints and without. The basic aminoacid-aminoacid potential is Lennard Jones for the native contacts and…
We report results of a systematic analysis of spatial solitons in the model of 1D photonic crystals, built as a periodic lattice of waveguiding channels, of width D, separated by empty channels of width L-D. The system is characterized by…
Avalanches with power-law distributed size parameters have been observed in neuronal networks. This observation might be a manifestation of the self-organized criticality (SOC). Yet, the physiological mechanicsm of this behavior is…
Charge transfer in homogeneous nucleotide chains is modeled on the basis of Holstein Hamiltonian. The path length of Davydov solitons in these chains is being studied. It is shown that in a dispersionless case, when the soliton velocity V…
We propose a model of $1/f$ noise in semiconductors based on the drift of individual charge carriers and their interaction with the trapping centers. We assume that the trapping centers are homogeneously distributed in the material. The…
The emergence of confined structures and pattern formation are exceptional manifestations of concurring nonlinear interactions found in a variety of physical, chemical and biological systems[1]. Optical solitons are a hallmark of extreme…
A layer-by-layer description of the asymmetric lattice gas model for 1/f-noise suggested by Jensen [Phys. Rev. Lett. 64, 3103 (1990)] is presented. The power spectra of the lattice layers in the direction perpendicular to the particle flux…
We calculate time correlation functions in the Bak-Sneppen model (Phys. Rev. Lett. {\bf 71} 4083 (1993)), a model showing self-organised criticality. For a random neighbour version of the model, analytical results are presented, while on a…
Heuristic insights into a physical picture of Davydov's solitonic model of the one-dimensional protein chain are presented supporting the idea of a non-equilibrium competition between the Davydov phase and a complementary, dynamical-…
We consider an array of dual-core waveguides, which represent an optical realization of a chain of dimers, with an active (gain-loss) coupling between the cores, opposite signs of discrete diffraction in the parallel arrays, and a…
In the present work, we study, by means of a one-dimensional lattice model, the collective excitations corresponding to intra molecular ones of a chain like proteins. It is shown that such excitations are described by the Nonlinear…