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Density-functional theory calculations are performed to investigate hydrogen transport in the proton conductor BaSnO$_3$. Structural optimizations in the stable and saddle point configurations for transfer and reorientation allow…

Materials Science · Physics 2014-11-13 Grégory Geneste , Alistar Ottochian , Jessica Hermet , Guilhem Dezanneau

The recent discovery of phase IV of solid hydrogen and deuterium consisting of two alternate layers of graphenelike three-molecule rings and unbound H2 molecules have generated great interests. However, vibrational nature of phase IV…

Materials Science · Physics 2013-01-18 Hanyu Liu , Yanming Ma

Hydrogen addition and abstraction reactions play an important role as surface reactions in the buildup of complex organic molecules in the dense interstellar medium. Addition reactions allow unsaturated bonds to be fully hydrogenated, while…

Astrophysics of Galaxies · Physics 2018-09-19 V. Zaverkin , T. Lamberts , M. N. Markmeyer , J. Kästner

We study the dynamical behaviour of the proton transfer in the hydrogen bonds in the base-pairs of the double helices of the DNA type. Under the assumption that the elastic and the tunnelling degrees of freedom may be coupled, we derive a…

Soft Condensed Matter · Physics 2009-11-07 V. L. Golo , E. I. Kats , M. Peyrard

I have investigated the structural and dynamic properties of water by performing a series of molecular dynamic simulations in the range of temperatures from 213 K to 360 K, using the Simple Point Charge-Extended (SPC/E) model. I performed…

Soft Condensed Matter · Physics 2010-02-23 M. G. Campo

We propose a simple model of cytochrome c oxidase, including four redox centers and four protonable sites, to study the time evolution of electrostatically coupled electron and proton transfers initiated by the injection of a single…

Other Condensed Matter · Physics 2015-05-13 Anatoly Yu. Smirnov , Lev G. Mourokh , Franco Nori

Glycerol acts as a natural cryoprotectant by depressing the temperature of ice nucleation and slowing down the dynamics of water mixtures. In this work we characterize dynamics -- diffusion, viscosity, and hydrogen-bond dynamics -- as well…

The properties of the hydrogen bonds in ethylammonium nitrate are analyzed by using molecular dynamics simulations and infrared as well as nuclear magnetic resonance experiments. Ethylammonium nitrate features a flexible three-dimensional…

Chemical Physics · Physics 2018-02-14 Tobias Zentel , Viviane Overbeck , Dirk Michalik , Oliver Kühn , Ralf Ludwig

The resistance of hydrogen-bond networks to ambient flow in water produces viscoelectric stresses and contributes to electrostrictive pressure. Within Onsager's nonequilibrium thermodynamic framework, a lattice-gas description of aqueous…

Soft Condensed Matter · Physics 2026-03-16 Pramodt Srinivasula

Hydrated excess protons under hydrophobic confinement are a critical component of charge transport behavior and reactivity in nanoporous materials and biomolecular systems. Herein excess proton confinement effects are computationally…

Soft Condensed Matter · Physics 2020-06-04 Xinyou Ma , Chenghan Li , Alex B. F. Martinson , Gregory A. Voth

We use computer simulations to study the kinetics and mechanism of proton passage through a narrow-pore carbon-nanotube membrane separating reservoirs of liquid water. Free energy and rate constant calculations show that protons move across…

Soft Condensed Matter · Physics 2009-11-11 Christoph Dellago , Gerhard Hummer

We propose a two-sublattice proton ordering model for the quasione-dimensional CsH$_2$PO$_4$ ferroelectric with hydrogen bonds, which takes into account linear on lattice strains $u_1$, $u_2$, $u_3$ and $u_5$ contribution to the energy of…

Materials Science · Physics 2021-01-20 A. S. Vdovych , I. R. Zachek , R. R. Levitskii

We present two models for electron-driven uphill proton transport across lipid membranes, with the electron energy converted to the proton gradient via the electrostatic interaction. In the first model, associated with the cytochrome c…

Mesoscale and Nanoscale Physics · Physics 2015-05-20 Anatoly Yu. Smirnov , Lev G. Mourokh , Franco Nori

The influence of an intramolecular proton transfer reaction on the conductance of a molecular junction is investigated employing a generic model, which includes the effects of the electric field of the gate and leads electrodes and the…

Mesoscale and Nanoscale Physics · Physics 2017-03-08 Chriszandro Hofmeister , Pedro B. Coto , Michael Thoss

Using modified Arrhenius approximations, the activation energies of water, alcohols, and hexane structure rearrangement reactions responsible for temperature dependences of their dynamic and dielectric characteristics were determined. The…

Chemical Physics · Physics 2021-01-19 Alexander Kholmanskiy

We probe the superfluid-superconductor dynamics of the rotating outer core of neutron stars through half-vortex states. By means of a generalized hydrodynamic model, where proton and neutron fluids are coupled by both dynamic entrainment…

Nuclear Theory · Physics 2025-05-13 J. A. Gil Granados , A. Muñoz Mateo , X. Viñas

Signatures of solvated excess protons in infrared difference absorption spectra, such as the continuum band between the water bend and stretch bands, have been experimentally known for a long time, but the theoretical basis for linking…

Chemical Physics · Physics 2022-07-29 Florian N. Brünig , Manuel Rammler , Ellen M. Adams , Martina Havenith , Roland R. Netz

The interfacial electronic properties of complex oxides are governed by a delicate balance between charge transfer, lattice distortions, and electronic correlations, posing a key challenge for controlled tunability in materials research.…

Materials Science · Physics 2025-11-05 Haidong Liang , Ganesh Ji Omar , Kun Han , Andrew A. Bettiol , Zhen Huang , A. Ariando

We explore the correlated dynamics of an electron-hole and a proton after ionization of a protonated water cluster by extreme ultra-violet (XUV) light. An ultrafast decay mechanism is found in which the proton--hole dynamics after the…

Chemical Physics · Physics 2015-06-12 Zheng Li , Mohamed El-Amine Madjet , Oriol Vendrell , Robin Santra

We report a detailed computational study by Brownian Dynamics simulations of the structure and dynamics of a liquid of patchy particles which develops an amorphous tetrahedral network upon decreasing temperature. The highly directional…

Soft Condensed Matter · Physics 2016-12-02 Sandalo Roldan-Vargas , Lorenzo Rovigatti , Francesco Sciortino
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