English
Related papers

Related papers: Basin Entropy in Boolean Network Ensembles

200 papers

Power systems dominated by renewable energy encounter frequently large, random disturbances, and a critical challenge faced in power-system management is how to anticipate accurately whether the perturbed systems will return to the…

Machine Learning · Computer Science 2023-05-25 Yao Du , Qing Li , Huawei Fan , Meng Zhan , Jinghua Xiao , Xingang Wang

During a spontaneous change, a macroscopic physical system will evolve towards a macro-state with more realizations. This observation is at the basis of the Statistical Mechanical version of the Second Law of Thermodynamics, and it provides…

Statistical Mechanics · Physics 2020-04-22 Mengjie Zu , Arunkumar Bupathy , Daan Frenkel , Srikanth Sastry

Complex systems are large collections of entities that organize themselves into non-trivial structures that can be represented by networks. A key emergent property of such systems is robustness against random failures or targeted attacks…

Physics and Society · Physics 2021-06-14 Arsham Ghavasieh , Massimo Stella , Jacob Biamonte , Manlio De Domenico

In this work, several random Boolean networks (RBN) are generated and analyzed from two characteristics: their time evolution diagram and their transition diagram. For this purpose, its randomness is estimated using three measures, of which…

Information Theory · Computer Science 2024-09-04 Manuel de J. Luevano , Alejandro Puga

Entropy notions for $\varepsilon$-incremental practical stability and incremental stability of deterministic nonlinear systems under disturbances are introduced. The entropy notions are constructed via a set of points in state space which…

Optimization and Control · Mathematics 2022-09-13 Michelle S. Chong

We study the dynamics of randomly connected networks composed of binary Boolean elements and those composed of binary majority vote elements. We elucidate their differences in both sparsely and densely connected cases. The quickness of…

Disordered Systems and Neural Networks · Physics 2013-03-06 Shun-ichi Amari , Hiroyasu Ando , Taro Toyoizumi , Naoki Masuda

Boolean networks, inspired by gene regulatory networks, were developed to understand the complex behaviors observed in biological systems, with network attractors corresponding to biological phenotypes or cell types. In this article, we…

Molecular Networks · Quantitative Biology 2025-11-25 Venkata Sai Narayana Bavisetty , Matthew Wheeler , Reinhard Laubenbacher , Claus Kadelka

The Mackey-Glass system is a paradigmatic example of a delayed model whose dynamics is particularly complex due to, among other factors, its multistability involving the coexistence of many periodic and chaotic attractors. The prediction of…

Chaotic Dynamics · Physics 2024-10-16 Juan P. Tarigo , Cecilia Stari , Arturo C. Marti

Nature is full of random networks of complex topology describing such apparently disparate systems as biological, economical or informatical ones. Their most characteristic feature is the apparent scale-free character of interconnections…

Condensed Matter · Physics 2007-05-23 G. Wilk , Z. Wlodarczyk

Although compartmental dynamical systems are used in many different areas of science, model selection based on the maximum entropy principle (MaxEnt) is challenging because of the lack of methods for quantifying the entropy for this type of…

Information Theory · Computer Science 2023-08-23 Holger Metzler , Carlos A. Sierra

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. We here derive an expression for the number of attractors in…

Molecular Networks · Quantitative Biology 2007-05-23 Björn Samuelsson , Carl Troein

Maximum entropy estimation is of broad interest for inferring properties of systems across many different disciplines. In this work, we significantly extend a technique we previously introduced for estimating the maximum entropy of a set of…

Data Analysis, Statistics and Probability · Physics 2016-01-05 Elliot A. Martin , Jaroslav Hlinka , Alexander Meinke , Filip Děchtěrenko , Jörn Davidsen

Random Boolean networks are models of disordered causal systems that can occur in cells and the biosphere. These are open thermodynamic systems exhibiting a flow of energy that is dissipated at a finite rate. Life does work to acquire more…

Other Quantitative Biology · Quantitative Biology 2010-09-16 Hilary A. Carteret , Kelly John Rose , Stuart A. Kauffman

Boolean networks are a popular modeling framework in computational biology to capture the dynamics of molecular networks, such as gene regulatory networks. It has been observed that many published models of such networks are defined by…

Molecular Networks · Quantitative Biology 2019-12-06 Elijah Paul , Gleb Pogudin , William Qin , Reinhard Laubenbacher

A non-ergodic quantum state of a many body system is in general random as well as multi-parametric, former due to a lack of exact information due to complexity and latter reflecting its varied behavior in different parts of the Hilbert…

Quantum Physics · Physics 2023-06-21 Devanshu Shekhar , Pragya Shukla

Dynamical systems has a variety of applications for the new information generated during the time. Many phenomenons like physical, chemical or social are not static, then an analysis over the time is necessary. In this work, an experimental…

Machine Learning · Computer Science 2020-09-29 Diana C. Roca Arroyo , Josimar E. Chire Saire

We deal with stochastic network simulations in a model with three distinct species that compete under cyclic rules which are similar to the rules of the popular rock-paper-scissors game. We investigate the Hamming distance density and then…

Biological Physics · Physics 2019-04-18 M. Mugnaine , F. M. Andrade , J. D. Szezech, , D. Bazeia

Data stream mining problem has caused widely concerns in the area of machine learning and data mining. In some recent studies, ensemble classification has been widely used in concept drift detection, however, most of them regard…

Data Structures and Algorithms · Computer Science 2017-08-14 Junhong Wang , Shuliang Xu , Bingqian Duan , Caifeng Liu , Jiye Liang

We construct and investigate Boolean networks that follow a given reliable trajectory in state space, which is insensitive to fluctuations in the updating schedule, and which is also robust against noise. Robustness is quantified as the…

Biological Physics · Physics 2010-12-02 Christoph Schmal , Tiago P. Peixoto , Barbara Drossel

We study classes of dynamical systems that can be obtained by constructing recursive networks with monotone Boolean functions. Stack filters in nonlinear signal processing are special cases of such systems. We show an analytical connection…

Disordered Systems and Neural Networks · Physics 2009-07-28 Matti Nykter , Juha Kesseli , Ilya Shmulevich