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The conformational states of a semiflexible polymer enclosed in a volume $V:=\ell^{3}$ are studied as stochastic realizations of paths using the stochastic curvature approach developed in [Rev. E 100, 012503 (2019)], in the regime whenever…

Soft Condensed Matter · Physics 2021-05-24 Pavel Castro-Villarreal , J. E. Ramírez

Recent advances in single macromolecule experiments have sparked interest in the ensemble dependence of force-extension relations. The thermodynamic limit may not be attainable for such systems, that leads to inequivalence of the…

Soft Condensed Matter · Physics 2018-07-30 Sandipan Dutta , Panayotis Benetatos

We consider a fully directed self-avoiding walk model on a cubic lattice to mimic the conformations of an infinitely long confined flexible polymer chain; and the confinement condition is achieved by two parallel athermal plates. The…

Soft Condensed Matter · Physics 2021-06-21 P K Mishra

The diffusion of molecules (penetrants) of variable size, shape, and chemistry through dense crosslinked polymer networks is a fundamental scientific problem that is broadly relevant in materials, polymer, physical and biological chemistry.…

We simulate entangled linear polymers in free-standing thin film geometries where the confining dimension is on the same scale or smaller than the bulk chain dimensions. We compare both film-averaged and layer-resolved, spatially…

Soft Condensed Matter · Physics 2016-08-24 Daniel M. Sussman

Conformations of partially or fully adsorbed semiflexible polymer chains are studied varying both contour length $L$, chain stiffness, $\kappa$, and the strength of the adsorption potential over a wide range. Molecular Dynamics simulations…

Soft Condensed Matter · Physics 2019-10-02 Andrey Milchev , Kurt Binder

The statistical mechanics of nearly parallel vortex filaments confined in the unbounded plane by angular momentum, first studied by Lions and Majda (2000), is investigated using a mean-field approximation to interaction and a spherical…

Mathematical Physics · Physics 2007-05-23 Timothy D. Andersen , Chjan C. Lim

We present a statistical study of the transmission and dwell-time matrices in disordered media composed of resonators, focusing on how frequency detuning influences their eigenvalue distributions. Our analysis reveals that the distribution…

Optics · Physics 2024-12-02 Romain Rescanieres , Romain Pierrat , Arthur Goetschy

This study investigates the (longitudinal) thermodynamic and structural characteristics of single-file confined square-well and square-shoulder disks by employing a mapping technique that transforms the original system into a…

Soft Condensed Matter · Physics 2024-08-13 Ana M. Montero , Andrés Santos

We present the analytical solution of the wavefunction and energy dispersion of armchair graphene nanoribbons (GNRs) based on the tight-binding approximation. By imposing hard-wall boundary condition, we find that the wavevector in the…

Mesoscale and Nanoscale Physics · Physics 2015-06-25 Huaixiu Zheng , Zhengfei Wang , Tao Luo , Qinwei Shi , Jie Chen

We describe a simple meanfield variational approach to study a number of properties of intrinsically stiff chains which are appropriate models for a large class of biopolymers. We present the calculation of the distribution of end-to-end…

Soft Condensed Matter · Physics 2008-02-03 D. Thirumalai , B. -Y. Ha

We show using Brownian dynamics simulations and theory how the shear relaxation modulus G(t) of dilute solutions of relatively stiff semiflexible polymers differs qualitatively from that of rigid rods. For chains shorter than their…

Soft Condensed Matter · Physics 2009-10-31 Matteo Pasquali , V. Shankar , David C. Morse

We present a theoretical analysis of a simple model of the depinning of an anchored semiflexible polymer from a fixed planar substrate in (1+1) dimensions. We consider a polymer with a discrete sequence of pinning sites along its contour.…

Soft Condensed Matter · Physics 2009-11-07 Panayotis Benetatos , Erwin Frey

Cyclotron resonance has been measured in far-infrared transmission of GaAs/Al$_x$Ga$_{1-x}$As heterostructures with an etched hexagonal lateral superlattice. Non-linear dependence of the resonance position on magnetic field was observed as…

Mesoscale and Nanoscale Physics · Physics 2012-05-22 L. Nadvornik , M. Orlita , N. A. Goncharuk , L. Smrcka , V. Novak , V. Jurka , K. Hruska , Z. Vyborny , Z. R. Wasilewski , M. Potemski , K. Vyborny

We investigate the transmission properties of quasiperiodic or aperiodic structures based on graphene arranged according to the Cantor sequence. In particular, we have found self-similar behaviour in the transmission spectra, and most…

Mesoscale and Nanoscale Physics · Physics 2016-02-17 R. Rodríguez-González , I. Rodríguez-Vargas , D. S. Díaz-Guerrero , L. M. Gaggero-Sager

There has been increasing interest in making the photonic devices more and more compact in the integrated photonics industry, and one of the important questions for manufacturers and design engineers is how to quantify the effect of the…

Optics · Physics 2016-11-23 Shidong Jiang , Jun Lai

Responsive particles, such as biomacromolecules or hydrogels, display a broad and polymodal distribution of conformations and have thus the ability to change their properties (e.g, size, shape, charge density, etc.) substantially in…

Soft Condensed Matter · Physics 2020-10-28 Yi-Chen Lin , Benjamin Rotenberg , Joachim Dzubiella

Active transport of biomolecules assisted by motor proteins is imperative for the proper functioning of cellular activities. Inspired by the diffusion of active agents in crowded cellular channels, we computationally investigate the…

Soft Condensed Matter · Physics 2022-01-19 Rajiblochan Sahoo , Ligesh Theeyancheri , Rajarshi Chakrabarti

Self-avoiding walks are studied on the 3-simplex fractal lattice as a model of linear polymer conformations in a dilute, non-homogeneous solution. A model is supplemented with bending energies and attractive-interaction energies between…

Statistical Mechanics · Physics 2023-02-21 Dušanka Marčetić

Transport of rodlike particles in confinement environments of macromolecular networks plays crucial roles in many important biological processes and technological applications. The relevant understanding has been limited to thin rods with…

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