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Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of non-equilibrium statistical physics, the totally…

Quantitative Methods · Quantitative Biology 2019-08-15 Jingkui Wang , Benjamin Pfeuty , Quentin Thommen , Carmen Romano , Marc Lefranc

In this paper we consider the totally asymmetric simple exclusion process, with non-random initial condition having three regions of constant densities of particles. From left to right, the densities of the three regions are increasing.…

Mathematical Physics · Physics 2020-01-08 Patrik L. Ferrari , Peter Nejjar

We study a system composed of two parallel totally asymmetric simple exclusion processes with open boundaries, where the particles move in the two lanes in opposite directions and are allowed to jump to the other lane with rates inversely…

Statistical Mechanics · Physics 2007-08-23 Robert Juhasz

Adding quenched disorder to the one-dimensional asymmetric exclusion process is known to always induce phase separation. To test the robustness of this result, we introduce two modifications of the process that allow particles to bypass…

Statistical Mechanics · Physics 2015-03-19 J. Szavits-Nossan , K. Uzelac

We consider the polynuclear growth (PNG) model in 1+1 dimension with flat initial condition and no extra constraints. The joint distributions of surface height at finitely many points at a fixed time moment are given as marginals of a…

Mathematical Physics · Physics 2010-03-09 Alexei Borodin , Patrik L. Ferrari , Tomohiro Sasamoto

In a recent study [C Arita and D Yanagisawa: J. Stat. Phys. 141, 829 (2010)] the stationary state of a parallel-update TASEP with varying system length, which can be regarded as a queueing process with excluded-volume effect (exclusive…

Statistical Mechanics · Physics 2015-05-20 Chikashi Arita , Andreas Schadschneider

We present the transition probability for the asymmetric simple exclusion process on the half-space for general initial conditions and particle insertion at the boundary. In the limit of total asymmetry, where particles only jump to the…

Probability · Mathematics 2025-12-03 Jan de Gier , William Mead , Daniel Remenik , Michael Wheeler

We consider a totally asymmetric simple exclusion on $\mathbb{Z}$ with the step initial condition, under the additional restriction that the first particle cannot cross a deterministally moving wall. We prove that such a wall may induce…

Probability · Mathematics 2021-11-05 Alexei Borodin , Alexey Bufetov , Patrik L. Ferrari

We calculate the spectral gap of the Markov matrix of the totally asymmetric simple exclusion process (TASEP) on a ring of L sites with N particles. Our derivation is simple and self-contained and extends a previous calculation that was…

Statistical Mechanics · Physics 2009-11-10 O. Golinelli , K. Mallick

We present a study of exclusion process on a peculiar topology of network with two intersected lanes, competing for the particles in a reservoir with finite capacity. To provide a theoretical ground for our findings, we exploit mean-field…

Statistical Mechanics · Physics 2021-08-04 Akriti Jindal , Arvind Kumar Gupta

We report here our preliminary results in the study of a new version of the generalized Totally Asymmetric Simple Exclusion process (gTASEP) on open tracks. In the gTASEP an additional interaction between the particles is considered,…

Statistical Mechanics · Physics 2022-12-06 A. M. Povolotsky , N. C. Pesheva , N. Zh. Bunzarova

In cells, most of cargos are transported by motor proteins along microtubule. Biophysically, unidirectional motion of large number of motor proteins along a single track can be described by totally asymmetric simple exclusion process…

Subcellular Processes · Quantitative Biology 2015-03-06 Minghua Song , Yunxin Zhang

We introduce a mean-field theoretical framework to describe multiple totally asymmetric simple exclusion processes (TASEPs) with different lattice lengths, entry and exit rates, competing for a finite reservoir of particles. We present…

Statistical Mechanics · Physics 2012-03-09 Philip Greulich , Luca Ciandrini , Rosalind J. Allen , M. Carmen Romano

We consider the totally asymmetric simple exclusion process with open boundaries, at the edge of the maximal current phase. Using analytic continuations from the known stationary eigenvalue, we obtain exact expressions for the spectral gaps…

Statistical Mechanics · Physics 2021-04-19 Ulysse Godreau , Sylvain Prolhac

The totally asymmetric simple exclusion process (TASEP) is a basic model of statistical mechanics that has found numerous applications. We consider the case of TASEP with a finite chain where particles may enter from the left and leave to…

Dynamical Systems · Mathematics 2020-06-23 Lars Grüne , Thomas Kriecherbauer , Michael Margaliot

We consider the one-dimensional asymmetric simple exclusion process (ASEP) in which particles jump to the right at rate $p\in(1/2,1]$ and to the left at rate $1-p$, interacting by exclusion. In the initial state there is a finite region…

Probability · Mathematics 2008-08-20 Pablo A. Ferrari , Patricia Goncalves , James B. Martin

Introduced in the late 1960's, the asymmetric exclusion process (ASEP) is an important model from statistical mechanics which describes a system of interacting particles hopping left and right on a one-dimensional lattice of n sites with…

Combinatorics · Mathematics 2022-04-27 Sylvie Corteel , Lauren Williams

We investigate the totally asymmetric simple exclusion process (TASEP) in the presence of obstacles that dynamically bind and unbind from the lattice. The model is motivated by biological processes such as transcription in the presence of…

Statistical Mechanics · Physics 2020-10-21 Juraj Szavits-Nossan , Bartlomiej Waclaw

The totally asymmetric simple exclusion process (TASEP) is a well studied example of far-from-equilibrium dynamics. Here, we consider a TASEP with open boundaries but impose a global constraint on the total number of particles. In other…

Statistical Mechanics · Physics 2008-07-02 D. A. Adams , B. Schmittmann , R. K. P. Zia

We theoretically study the Totally Asymmetric Exclusion Process (TASEP) with quenched jumping rates disorder and finite lifetime chain. TASEP is widely used to model the translation of messenger RNAs by Ribosomes in protein synthesis. Since…

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