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A theory for diffusivity estimation for spatially extended activator-inhibitor dynamics modelling the evolution of intracellular signaling networks is developed in the mathematical framework of stochastic reaction-diffusion systems. In…

Quantitative Methods · Quantitative Biology 2021-05-11 Gregor Pasemann , Sven Flemming , Sergio Alonso , Carsten Beta , Wilhelm Stannat

Diffusion of a tagged particle near a constraining biological surface is examined numerically by modeling the surface-water interaction by an effective potential. The effective potential is assumed to be given by an asymmetric double well…

Soft Condensed Matter · Physics 2007-05-23 Arnab Mukherjee , Biman Bagchi

We study agitated frictional disks in two dimensions with the aim of developing a scaling theory for their diffusion over time. As a function of the area fraction $\phi$ and mean-square velocity fluctuations $\langle v^2\rangle$ the…

Soft Condensed Matter · Physics 2019-10-09 H. G. E. Hentschel , Itamar Procaccia , Saikat Roy

We study the contributions of off-resonant transitions to the dynamics of a system of N multilevel atoms sharing one excitation and interacting with the quantized vector electromagnetic field. The Rotating Wave Approximation significantly…

Quantum Physics · Physics 2013-12-02 Yevhen Miroshnychenko , Klaus Mølmer

By means of analytical calculations and numerical simulations we study the diffusion properties in quasi-two-dimensional structures with two exciton subsystems with an exchange between them. The experimental realisation is possible in…

Statistical Mechanics · Physics 2024-07-18 Oluwafemi P. Adejumobi , Vladimir N. Mantsevich , Vladimir V. Palyulin

We consider the motion of an underdamped Brownian particle in a tilted periodic potential in a wide temperature range. Based on the previous data [1] and the new simulation results we show that the underdamped motion of particles in…

Statistical Mechanics · Physics 2013-07-17 I. G. Marchenko , I. I. Marchenko , A. V. Zhiglo

The transport equation of active motion is generalised to consider time-fractional dynamics for describing the anomalous diffusion of self-propelled particles observed in many different systems. In the present study, we consider an…

Statistical Mechanics · Physics 2023-10-27 Francisco J. Sevilla , Guillermo Chacón-Acosta , Trifce Sandev

We analyze point defect bulk and surface diffusion near the crystal-vacuum interface and show that bulk diffusion is altered by atomic reactions at the surface-vacuum boundary. A new atomic mechanism for point defect generation and…

Materials Science · Physics 2024-06-12 Sergey Kosolobov

We consider the motion of a particle on a surface which is a small perturbation of the standard sphere. One may qualitatively describe the motion by means of a precessing great circle of the sphere. The observation is employed to derive a…

Mathematical Physics · Physics 2007-05-23 V. L. Golo , D. O. Sinitsyn

In this paper, we develop an encounter-based model of partial surface adsorption for fractional diffusion in a bounded domain. We take the probability of adsorption to depend on the amount of particle-surface contact time, as specified by a…

Statistical Mechanics · Physics 2023-03-21 Paul C Bressloff

A key feature of the classical Fluctuation Dissipation theorem is its ability to approximate the average response of a dynamical system to a sufficiently small external perturbation from an appropriate time correlation function of the…

Mathematical Physics · Physics 2019-10-02 Rafail V. Abramov

In this article we address the problem of the nonlinear interaction of subdiffusive particles. We introduce the random walk model in which statistical characteristics of a random walker such as escape rate and jump distribution depend on…

Statistical Mechanics · Physics 2015-06-15 Sergei Fedotov

In this paper a reaction-diffusion type equation is the starting point for setting up a genuine thermodynamic reduction, i.e. involving a finite number of parameters or collective variables, of the initial system. This program is carried…

Mathematical Physics · Physics 2016-11-17 Franco Cardin , Marco Favretti , Alberto Lovison

In many biological and small scale technological applications particles may transiently bind to a cylindrical surface. In between two binding events the particles diffuse in the bulk, thus producing an effective translation on the cylinder…

Statistical Mechanics · Physics 2015-05-27 Aleksei V. Chechkin , Irwin M. Zaid , Michael A. Lomholt , Igor M. Sokolov , Ralf Metzler

We analyze the evolution of the distribution, both in the phase space and in the physical space, of inertial particles released by a spatially-localized (punctual) source and advected by an incompressible flow. The difference in mass…

Fluid Dynamics · Physics 2019-02-13 Marco Martins Afonso , Sílvio M. A. Gama

Consider the 3D flow of a viscous Newtonian fluid upon a curved 2D substrate when the fluid film is thin as occurs in many draining, coating and biological flows. We derive a comprehensive model of the dynamics of the film, the model being…

chao-dyn · Physics 2007-05-23 A. J. Roberts , Zhenquan Li

We present a comprehensive theoretical and computational model that explores the behavior of a thin hydrated film bonded to a non-hydrated / impermeable soft substrate in the context of surface and bulk elasticity coupled with surface…

Soft Condensed Matter · Physics 2025-05-07 Jaemin Kim , Keon Ho Kim , Nikolaos Bouklas

A stationary distribution function that describes the entire processes of propagation of relativistic particles, including the transition between the ballistic and diffusion regimes, is obtained. The spacial component of the constructed…

High Energy Astrophysical Phenomena · Physics 2015-10-14 A. Y. Prosekin , S. R. Kelner , F. A. Aharonian

Diffusive transport of a particle in spatially correlated random energy landscape having exponential density of states has been considered. We exactly calculate the diffusivity in the nondispersive quasi-equilibrium transport regime and…

Disordered Systems and Neural Networks · Physics 2018-02-14 S. V. Novikov

The average-atom model is applied to study Thomson scattering of x-rays from warm-dense matter with emphasis on scattering by bound electrons. Parameters needed to evaluate the dynamic structure function (chemical potential, average ionic…

Plasma Physics · Physics 2015-06-05 W. R. Johnson , J. Nilsen , K. T. Cheng