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We have measured the spatial distribution of motile Escherichia coli inside spherical water droplets emulsified in oil. At low cell concentrations, the cell density peaks at the water-oil interface; at increasing concentration, the bulk of…

A density functional study of the structure of a layer formed by chain molecules pinned to a solid surface is presented. The chains are modeled as freely joined spheres. Segments and all components interact via Lennard-Jones (12-6)…

Soft Condensed Matter · Physics 2012-07-16 M. Borówko , T. Staszewski

Cilia and flagella exhibit regular bending waves that perform mechanical work on the surrounding fluid, to propel cellular swimmers and pump fluids inside organisms. Here, we quantify a force-velocity relationship of the beating flagellum,…

Cell Behavior · Quantitative Biology 2016-12-21 Gary S. Klindt , Christian Ruloff , Christian Wanger , Benjamin M. Friedrich

We grafted polyacrylic acid brushes containing cysteine side chains at a defined surface density on planar lipid membranes. Specular X-ray reflectivity data indicated that the addition of Cd2+ ions induces the compaction of the polymer…

Soft Condensed Matter · Physics 2022-03-29 Felix Weissenfeld , Lucia Wesenberg , Masaki Nakahata , Marcus Müller , Motomu Tanaka

We study suspensions of rigid particles in a plane Couette flow with deformable elastic walls. We find that, in the limit of vanishing inertia, the elastic walls induce shear thinning of the suspension flow such that the effective viscosity…

Soft Condensed Matter · Physics 2019-06-25 Marco Edoardo Rosti , Mehdi Niazi Ardekani , Luca Brandt

Many methods to computationally predict red blood cell damage have been introduced, and among these are Lagrangian methods which track the cells along their pathlines. Such methods typically do not explicitly include cell-cell interactions.…

Fluid Dynamics · Physics 2023-09-22 Grant Rydquist , Mahdi Esmaily

The present research is devoted to the problem of stability of the fluid flow moving in a channel with flexible walls and interacting with the walls, which are subject to traveling waves. Experimental data shows that the energy of the…

Fluid Dynamics · Physics 2021-01-01 Marianna A. Shubov , Madeline M. Edwards

We study passive scalar mixing by parallel shear flows in the presence of weak molecular diffusion. We recover the sharp uniform-in-diffusivity mixing rate for shear flows with finitely many critical points, recently proven in [1]. Our…

Analysis of PDEs · Mathematics 2026-03-11 Kyle L. Liss , Kunhui Luan

Bistability is a major mechanism for cellular decision making and usually results from positive feedback in biochemical control systems. Here we show theoretically that bistability between unbound and bound states of adhesion clusters…

Subcellular Processes · Quantitative Biology 2010-02-24 T. Erdmann , U. S. Schwarz

We present here exact results for a one-dimensional gas, or fluid, of hard-sphere particles with attractive boundaries. The particles, which can exchange with a bulk reservoir, mediate an interaction between the boundaries. A…

Statistical Mechanics · Physics 2015-05-14 Bartosz Rozycki , Reinhard Lipowsky , Thomas R. Weikl

Experimental characterization of blood flow in living organisms is crucial for understanding the development and function of cardiovascular systems, but there have been no techniques reported for snapshot imaging of thick samples in large…

The adhesion of cell membranes is mediated by the binding of membrane-anchored receptor and ligand proteins. In this article, we review recent results from simulations and theory that lead to novel insights on how the binding equilibrium…

Biomolecules · Quantitative Biology 2016-06-15 Thomas R. Weikl , Jinglei Hu , Guang-Kui Xu , Reinhard Lipowsky

The flow behavior of blood in microvessels is directly associated with tissue perfusion and oxygen delivery. Current efforts on modeling blood flow have primarily focused on the flow properties of blood with red blood cells (RBCs) having a…

Soft Condensed Matter · Physics 2024-06-03 Wei Chien , Gerhard Gompper , Dmitry A. Fedosov

A coarse grained description of a two phase fluid is used to study the steady state configuration of the interface separating the coexisting phases, and the motion of the contact line at which the interface intersects a solid boundary. The…

Statistical Mechanics · Physics 2009-10-31 Hsuan-Yi Chen , David Jasnow , Jorge Vinals

Boundary layers in turbulent flows require fine grid spacings near the walls which depend on the choice of turbulence model. To satisfy these requirements a semi-structured mesh is generally used in this area with orthogonal and layered…

Fluid Dynamics · Physics 2014-05-06 Kedar C. Chitale , Michel Rasquin , Onkar Sahni , Mark S. Shephard , Kenneth E. Jansen

Biomimetic membranes in contact with a planar substrate or a second membrane are studied theoretically. The membranes contain specific adhesion molecules (stickers) which are attracted by the second surface. In the absence of stickers, the…

Soft Condensed Matter · Physics 2016-08-31 Thomas R. Weikl , David Andelman , Shigeyuki Komura , Reinhard Lipowsky

We show that the formation of the wetting layer and the experimentally observed continuous shift of the H2O-OH balance towards molecular water at increasing coverage on a TiO2(110) surface can be rationalized on a molecular level. The…

Materials Science · Physics 2013-08-20 M. Amft , L. E. Walle , D. Ragazzon , A. Borg , P. Uvdal , N. V. Skorodumova , A. Sandell

We introduce a measure for energetic efficiency of biological cilia acting individually or collectively and numerically determine the optimal beating patterns according to this criterion. Maximizing the efficiency of a single cilium leads…

Biological Physics · Physics 2011-09-21 Natan Osterman , Andrej Vilfan

Colloidal suspensions have a rich rheology and can exhibit shear-thinning as well as shear-thickening. Numerical simulations recently suggested that shear-thickening may be attributed to the inertia of the colloids, besides the hydrodynamic…

Soft Condensed Matter · Physics 2015-06-16 Vincent Démery

Surfactant distribution heterogeneities at a fluid/fluid interface trigger the Marangoni effect, i.e. a bulk flow due to a surface tension gradient. The influence of surfactant solubility in the bulk on these flows remains incompletely…