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The self-assembly of hard polyhedral particles confined to a flat interface is studied using Monte Carlo simulations. The particles are pinned to the interface by restricting their movement in the direction perpendicular to it while…

Soft Condensed Matter · Physics 2014-12-02 V. Thapar , T. Hanrath , F. A. Escobedo

We present the algorithm for generating strictly saturated random sequential adsorption packings built of rounded polygons. It can be used to study various properties of such packings built of a wide variety of different shapes and in…

Statistical Mechanics · Physics 2021-06-23 Michał Cieśla , Piotr Kubala , Konrad Kozubek

Manipulating the way in which colloidal particles self-organise is a central challenge in the design of functional soft materials. Meeting this challenge requires the use of building blocks that interact with one another in a highly…

Soft Condensed Matter · Physics 2021-03-30 Joe G Donaldson , Peter Schall , Laura Rossi

Creating materials with structure that is independently controllable at a range of scales requires breaking naturally occurring hierarchies. Breaking these hierarchies can be achieved via the decoupling of building block attributes from…

Soft Condensed Matter · Physics 2022-07-04 Lucia Baldauf , Erin G. Teich , Peter Schall , Greg van Anders , Laura Rossi

Self-assembly of structures from vertically aligned, charged dust particle bundles within a glass box placed on the lower, powered electrode of a RF GEC cell were produced and examined experimentally. Self-organized formation of…

Plasma Physics · Physics 2015-06-15 Truell W. Hyde , Jie Kong , Lorin S. Matthews

The protein shells, or capsids, of all sphere-like viruses adopt icosahedral symmetry. In the present paper we propose a statistical thermodynamic model for viral self-assembly. We find that icosahedral symmetry is not expected for viral…

Soft Condensed Matter · Physics 2009-11-07 Robijn F. Bruinsma , William M. Gelbart , David Reguera , Joseph Rudnick , Roya Zandi

We present results of fully self-consistent N-body simulations of the motion of four globular clusters moving in the inner region of their parent galaxy. With regard to previous simplified simulations, we confirm merging and formation of an…

Astrophysics · Physics 2008-07-13 R. Capuzzo-Dolcetta , P. Miocchi

We investigate the internal structure of clusters of galaxies in high-resolution N-body simulations of 4 different cosmologies. There is a higher proportion of disordered clusters in critical-density than in low-density universes, although…

We analyze the geometric structure and mechanical stability of a complete set of isostatic and hyperstatic sphere packings obtained via exact enumeration. The number of nonisomorphic isostatic packings grows exponentially with the number of…

Soft Condensed Matter · Physics 2015-06-04 Robert S. Hoy , Jared Harwayne-Gidansky , Corey S. O'Hern

Rotating clusters or vortices are formations of agents that rotate around a common center. These patterns may be found in very different contexts: from swirling fish to surveillance drones. Here, we propose a minimal model for…

Adaptation and Self-Organizing Systems · Physics 2023-05-16 Julia Cantisán , Jesús M. Seoane , Miguel A. F. Sanjuán

While small single stranded viral shells encapsidate their genome spontaneously, many large viruses, such as the Herpes virus or Infectious Bursal Disease Virus (IBDV), typically require a template, consisting of either scaffolding proteins…

Biological Physics · Physics 2018-09-07 Siyu Li , Polly Roy , Alex Travesset , Roya Zandi

If a collection of identical particles is poured into a container, different shapes will fill to different densities. But what is the shape that fills a container as close as possible to a pre-specified, desired density? We demonstrate a…

Soft Condensed Matter · Physics 2014-03-18 Marc Z. Miskin , Heinrich M. Jaeger

We present fast simulation methods for the self-assembly of complex shapes in two dimensions. The shapes are modeled via a general boundary curve and interact via a standard volume term promoting overlap and an interpenetration penalty. To…

Computational Physics · Physics 2023-12-11 Lukas Mayrhofer , Myfanwy E. Evans , Gero Friesecke

We study the packing fraction of clusters in free-falling streams of spherical and irregularly shaped particles using flash X-ray radiography. The estimated packing fraction of clusters is low enough to correspond to coordination numbers…

Soft Condensed Matter · Physics 2021-03-31 Yuuya Nagaashi , Akiko M. Nakamura , Sunao Hasegawa , Koji Wada

The core structure of galaxy clusters is fundamentally important. Even though self-gravitating systems have no stable equilibrium state due to their negative heat capacity, numerical simulations find density profiles which are universal in…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-15 Matthias Bartelmann , Marceau Limousin , Massimo Meneghetti , Robert Schmidt

Soft particles are known to overlap and form stable clusters that self-assemble into periodic crystalline phases with density-independent lattice constants. We use molecular dynamics simulations in two dimensions to demonstrate that,…

Soft Condensed Matter · Physics 2014-09-08 Kobi Barkan , Michael Engel , Ron Lifshitz

Curved structures in soft matter and biological systems commonly emerge as a result of self-assembly processes where building blocks aggregate in a controlled manner, giving rise to specific system structure and properties. Learning how to…

Soft Condensed Matter · Physics 2025-02-24 Andraž Gnidovec , Simon Čopar

We consider collective dynamics of self-propelling particles in two dimensions. They can align themselves according to the direction of propulsion of their neighbours, together with a random perturbation (i.e. rotational fluctuation). They…

Soft Condensed Matter · Physics 2019-04-01 Shubhashis Rana , Md. Samsuzzaman , Arnab Saha

Complex colloidal cluster morphologies are desirable for the fabrication of advanced materials, such as photonic crystals and meta-materials, and can be formed through evaporation-driven packing. By coupling lattice Boltzmann and discrete…

Soft Condensed Matter · Physics 2026-05-07 Junyu Yang , Abhinav Naga , Xitong Zhang , Halim Kusumaatmaja

Biomolecular condensates are liquid- or gel-like droplets of proteins and nucleic acids formed at least in part through liquid-liquid phase separation. Condensates enable diverse functions of cells and the pathogens that infect them,…

Soft Condensed Matter · Physics 2025-05-16 Layne B. Frechette , Naren Sundararajan , Fernando Caballero , Anthony Trubiano , Michael F. Hagan