Related papers: DNA bubble dynamics as a quantum Coulomb problem
We investigate diffusion-limited reactions between a diffusing particle and a target site on a semiflexible polymer, a key factor determining the kinetics of DNA-protein binding and polymerization of cytoskeletal filaments. Our theory…
We investigate the stochastic dynamics of one sedimenting active Brownian particle in three dimensions under the influence of gravity and passive fluctuations in the translational and rotational motion. We present an analytical solution of…
The ostwald ripening of bubbles is studied by molecular dynamics simulations involving up to 679 million Lennard-Jones particles. Many bubbles appear after depressurizing a system that is initially maintained in the pure-liquid phase, and…
We study the classical motion of a particle subject to a stochastic force. We then present a perturbative schema for the associated Fokker-Planck equation where, in the limit of a vanishingly small noise source, a consistent dynamical model…
False vacuum decay is a potential mechanism governing the evolution of the early Universe, with profound connections to non-equilibrium quantum physics, including quenched dynamics, the Kibble-Zurek mechanism, and dynamical metastability.…
We obtain, using transfer matrix methods, the distribution function $P(R)$ of the end-to-end distance, the loop formation probability and force-extension relations in a model for short double-stranded DNA molecules. Accounting for the…
The Coulomb dissociation is studied of the $^8L$i nuclei on Pb target at energies 40.3 and 69.5 MeV/nucleon, in the experiment NSCL #03038. The $^{6,7}$Li, $^{4,6}$He, and $^2$H fragments were identified. The resonance decay and the direct…
We consider a classical system of n charged particles in an external confining potential, in any dimension d larger than 2. The particles interact via pairwise repulsive Coulomb forces and the coupling parameter scales like the inverse of n…
We study Coulomb drag between an active layer with a clean electron liquid and a passive layer with a pinned electron lattice in the regime of fast intralayer equilibration. Such a two-fluid system offers an experimentally realizable way to…
We theoretically investigate the non-equilibrium dynamics of homogeneous ultracold Bose gases of microwave-shielded polar molecules following a sudden quench of the scattering length at zero temperature. We calculate in particular the…
We study the long-time behavior of the dynamics of interacting planar Brow-nian particles, confined by an external field and subject to a singular pair repulsion. The invariant law is an exchangeable Boltzmann -- Gibbs measure. For a…
We investigate the non-equilibrium mechanical motion of double-stranded DNA in a molecular junction under electronic current using Keldysh-Langevin molecular dynamics. Non-equilibrium electronic force reshapes the effective potential energy…
Recent theoretical predictions on DNA mechanical separation induced by pulling forces are numerically tested within a model in which self-avoidance for DNA strands is fully taken into account. DNA strands are described by interacting pairs…
We consider the FENE dumbbell polymer model which is the coupling of the incompressible Navier-Stokes equations with the corresponding Fokker-Planck-Smoluchowski di ffusion equation. We show global well-posedness in the case of a 2D bounded…
We consider the two dimensional Schr\"odinger equation with time dependent delta potential, which represents a model for the dynamics of a quantum particle subject to a point interaction whose strength varies in time. First, we prove global…
The phase space dynamics of dissipative quantum systems in strongly condensed phase is considered. Based on the exact path integral approach it is shown that the Wigner transform of the reduced density matrix obeys a time evolution equation…
Poland-Scheraga models were introduced to describe the DNA denaturation transition. We give a rigorous and refined discussion of a family of these models. We derive possible scaling functions in the neighborhood of the phase transition…
We study pairs of interacting self-avoiding walks on the 3d simple cubic lattice. They have a common origin and are allowed to overlap only at the same monomer position along the chain. The latter overlaps are indeed favored by an energetic…
Melting of two dimensional (2D) clusters of classical particles is studied using Brownian dynamics and Langevin molecular dynamics simulations. The particles are confined by a circular hard wall or a parabolic external potential and…
The denaturation transition of circular DNA is studied within a Poland-Scheraga type approach, generalized to account for the fact that the total linking number (LK), which measures the number of windings of one strand around the other, is…