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Dynamic bonding is an essential feature of many soft materials. Molecular simulations have proven to be a powerful tool for modeling bonding kinetics and thermodynamics in these materials, providing insights into their properties that…

Soft Condensed Matter · Physics 2026-05-26 Tyla R. Holoman , B. P. Prajwal , Glen M. Hocky , Thomas M. Truskett

We consider the problem of how to determine the force laws in an amorphous system of interacting particles. Given the positions of the centers of mass of the constituent particles we propose a new algorithm to determine the inter-particle…

Soft Condensed Matter · Physics 2016-06-15 Oleg Gendelman , Yoav G. Pollack , Itamar Procaccia

Colloidal systems are often modelled as fluids of hard particles (possibly with an additional soft attraction, e.g. caused by polymers also contained in the suspension). in simulations of such systems, the virial theorem cannot be…

Soft Condensed Matter · Physics 2015-05-30 Debabrata Deb , Dorothea Wilms , Alexander Winkler , Peter Virnau , Kurt Binder

This work presents an elegant formalism to model the evolution of the full two rigid body problem. The equations of motion, given in a Cartesian coordinate system, are expressed in terms of spherical harmonics and Wigner D-matrices. The…

Earth and Planetary Astrophysics · Physics 2017-02-08 Gwenaël Boué

This is a review addressed to undergraduate students of electrical engineering and physics careers, and our aim is to present a pedagogical integration of some knowledge acquired in electromagnetism and electromechanical energy conversion…

Optics · Physics 2019-03-27 Robles Patricio , Rojas Roberto , Chiarella Italo

Event-driven molecular dynamics is a valuable tool in condensed and soft matter physics when particles can be modeled as hard objects or more generally if their interaction potential can be modeled in a stepwise fashion. Hard spheres model…

Computational Physics · Physics 2015-05-19 Cristiano De Michele

A number of problems arise when long-range forces, such as those governed by Bessel functions, are used in particle-particle simulations. If a simple cut-off for the interaction is used, the system may find an equilibrium configuration at…

Computational Physics · Physics 2009-11-06 Hans Fangohr , Andrew R. Price , Simon J. Cox , Peter A. J. de Groot , Geoffrey J. Daniell , Ken S. Thomas

The filtration of fluid in 2D porous medium is simulated by the molecular dynamics technique. The high concentration of fluid is created at the initial point in time and the number of fluid particles is investigated in all porous. The…

Fluid Dynamics · Physics 2007-05-23 Marat N. Ovchinnikov

We present an accurate Lagrangian method based on vortex particles, level-sets, and immersed boundary methods, for animating the interplay between two fluids and rigid solids. We show that a vortex method is a good choice for simulating…

Numerical Analysis · Mathematics 2016-08-16 Mathieu Coquerelle , Jérémie Allard , Georges-Henri Cottet , Marie-Paule Cani

Dispersions of immiscible liquids, such as emulsions and polymer blends, are at the core of many industrial applications which makes the understanding of their properties (morphology, stability, etc.) of great interest. A wide range of…

Chemical Physics · Physics 2017-08-10 Anaïs Giustiniani , Wiebke Drenckhan , Christophe Poulard

We present a new method for Monte Carlo or Molecular Dynamics numerical simulations of three dimensional polar fluids. The simulation cell is defined to be the surface of the northern hemisphere of a four-dimensional (hyper)sphere. The…

Soft Condensed Matter · Physics 2014-09-29 Jean-Michel Caillol , Martin Trulsson

We introduce corrections to the Navier-Stokes equation arising from the transitions between molecular states and the injection of external energy. In the simplest application of the proposed post Navier-Stokes equation, we find a…

Fluid Dynamics · Physics 2009-11-13 Pascal Getreuer , A. M. Albano , A. Muriel

A soft ellipsoid contact potential model for a pair of biaxial ellipsoidal molecules is proposed which considers the configuration dependent energy anisotropy explicitly along with their geometrical aspects. We performed Molecular Dynamics…

Soft Condensed Matter · Physics 2015-06-25 Jayashree Saha

Dynamics of the structured particles consisting of potentially interacting material points is considered in the framework of classical mechanics. Equations of interaction and motion of structured particles have been derived. The expression…

General Physics · Physics 2012-05-14 V. M. Somsikov

The properties of polymer liquids on hard and soft substrates are investigated by molecular dynamics simulation of a coarse-grained bead-spring model and dynamic single-chain-in-mean-field (SCMF) simulations of a soft, coarse-grained…

Soft Condensed Matter · Physics 2015-05-18 F. Léonforte , J. Servantie , C. Pastorino , M. Müller

Understanding microstructure in terms of closed-form expressions is an open challenge in nonequilibrium statistical physics. We propose a simple and generic method that combines particle-resolved simulations, deep neural networks and…

Soft Condensed Matter · Physics 2026-01-12 Writu Dasgupta , Suvendu Mandal , Aritra K. Mukhopadhyay , Benno Liebchen

A method of random forcing with a constant power input for two-dimensional gyrokinetic turbulence simulations is developed for the study of stationary plasma turbulence. The property that the forcing term injects the energy at a constant…

Plasma Physics · Physics 2021-03-29 Ryusuke Numata

A tutorial introduction to the technique of Molecular Dynamics (MD) is given, and some characteristic examples of applications are described. The purpose and scope of these simulations and the relation to other simulation methods is…

Disordered Systems and Neural Networks · Physics 2009-11-10 Kurt Binder , Jurgen Horbach , Walter Kob , Wolfgang Paul , Fathollah Varnik

We introduce and test via molecular simulation a simple model for predicting the manner in which interparticle interactions and thermodynamic conditions impact the single-particle free-volume distributions of equilibrium fluids. The model…

Soft Condensed Matter · Physics 2007-05-23 William P. Krekelberg , Venkat Ganesan , Thomas M. Truskett

We propose a new model for the description of complex granular particles and their interaction in molecular dynamics simulations of granular material in two dimensions. The grains are composed of triangles which are connected by deformable…

Materials Science · Physics 2007-05-23 Thorsten Poeschel , Volkhard Buchholtz