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Sequential neural activity is fundamental to cognition, yet how diverse sequences are recalled under biological constraints remains a key question. Existing models often struggle to balance biophysical realism and analytical tractability.…

Neurons and Cognition · Quantitative Biology 2025-12-04 Genki Shimizu , Taro Toyoizumi

Large-scale recordings of neural activity are providing new opportunities to study neural population dynamics. A powerful method for analyzing such high-dimensional measurements is to deploy an algorithm to learn the low-dimensional latent…

Neurons and Cognition · Quantitative Biology 2024-02-08 Xiaohan Liu , ChiJui Chen , YanLun Huang , LingChi Yang , Elham E Khoda , Yihui Chen , Scott Hauck , Shih-Chieh Hsu , Bo-Cheng Lai

We review theory and methodology of the class of simultaneous graphical dynamic linear models (SGDLMs) that provide flexibility, parsimony and scalability of multivariate time series analysis. Discussion includes core theoretical aspects…

Methodology · Statistics 2026-02-12 Mike West , Luke Vrotsos

We investigate the computational limits of the memory retrieval dynamics of modern Hopfield models from the fine-grained complexity analysis. Our key contribution is the characterization of a phase transition behavior in the efficiency of…

Machine Learning · Computer Science 2024-06-04 Jerry Yao-Chieh Hu , Thomas Lin , Zhao Song , Han Liu

Traditionally, Hawkes processes are used to model time--continuous point processes with history dependence. Here we propose an extended model where the self--effects are of both excitatory and inhibitory type and follow a Gaussian Process.…

Machine Learning · Statistics 2021-05-21 Noa Malem-Shinitski , Cesar Ojeda , Manfred Opper

The unprecedented predictive success of deep generative models in complex many-body systems, such as AlphaFold3, raises an epistemological question: do these networks merely memorize data distributions via high-dimensional interpolation, or…

Disordered Systems and Neural Networks · Physics 2026-05-18 Wenjie Xi , Wei-Qiang Chen

This work proposes a novel approach to evaluate and analyze the behavior of multi-population parallel genetic algorithms (PGAs) when running on a cluster of multi-core processors. In particular, we deeply study their numerical and…

Neural and Evolutionary Computing · Computer Science 2025-08-05 Tomohiro Harada , Enrique Alba , Gabriel Luque

Auto-regressive models are widely used in sequence generation problems. The output sequence is typically generated in a predetermined order, one discrete unit (pixel or word or character) at a time. The models are trained by teacher-forcing…

Computation and Language · Computer Science 2019-10-23 Daniel Duckworth , Arvind Neelakantan , Ben Goodrich , Lukasz Kaiser , Samy Bengio

We test four fast mean field type algorithms on Hopfield networks as an inverse Ising problem. The equilibrium behavior of Hopfield networks is simulated through Glauber dynamics. In the low temperature regime, the simulated annealing…

Disordered Systems and Neural Networks · Physics 2013-05-29 Haiping Huang

We address the challenge of forecasting counterfactual outcomes in a panel data with missing entries and temporally dependent latent factors -- a common scenario in causal inference, where estimating unobserved potential outcomes ahead of…

Methodology · Statistics 2026-02-03 Navonil Deb , Raaz Dwivedi , Sumanta Basu

We propose a novel class of prior distributions for sequences of orthogonal functions, which are frequently required in various statistical models such as functional principal component analysis (FPCA). Our approach constructs priors…

Methodology · Statistics 2025-12-25 Shonosuke Sugasawa , Daichi Mochihashi

Integrating non-Euclidean brain imaging data with Euclidean tabular data, such as clinical and demographic information, poses a substantial challenge for medical imaging analysis, particularly in forecasting future outcomes. While machine…

Machine Learning · Computer Science 2025-12-30 Runzhi Zhou , Xi Luo

Generative Bayesian Filtering (GBF) provides a powerful and flexible framework for performing posterior inference in complex nonlinear and non-Gaussian state-space models. Our approach extends Generative Bayesian Computation (GBC) to…

Methodology · Statistics 2025-11-07 Edoardo Marcelli , Sean O'Hagan , Veronika Rockova

In observational studies, treatment may be adapted to covariates at several times without a fixed protocol, in continuous time. Treatment influences covariates, which influence treatment, which influences covariates, and so on. Then even…

Statistics Theory · Mathematics 2015-09-02 Judith J. Lok

Graph neural networks are recognized for their strong performance across various applications, with the backpropagation algorithm playing a central role in the development of most GNN models. However, despite its effectiveness, BP has…

Machine Learning · Computer Science 2024-11-06 Gongpei Zhao , Tao Wang , Congyan Lang , Yi Jin , Yidong Li , Haibin Ling

The parallel dynamics of the fully connected Blume-Emery-Griffiths neural network model is studied at zero temperature for arbitrary using a probabilistic approach. A recursive scheme is found determining the complete time evolution of the…

Disordered Systems and Neural Networks · Physics 2009-11-07 D. Bolle , J. Busquets Blanco , G. M. Shim

Generative diffusion models have recently emerged as a leading approach for generating high-dimensional data. In this paper, we show that the dynamics of these models exhibit a spontaneous symmetry breaking that divides the generative…

Machine Learning · Computer Science 2023-10-27 Gabriel Raya , Luca Ambrogioni

Low-dimensional descriptions of neural network dynamics are an effective tool for bridging different scales of organization of brain structure and function. Recent advances in deriving mean-field descriptions for networks of coupled…

Neurons and Cognition · Quantitative Biology 2021-11-03 Richard Gast , Thomas R. Knösche , Helmut Schmidt

This article introduces a novel nonparametric methodology for Generalized Linear Models which combines the strengths of the binary regression and latent variable formulations for categorical data, while overcoming their disadvantages.…

Machine Learning · Statistics 2021-10-12 K. P. Chowdhury

Generalized linear models are one of the most efficient paradigms for predicting the correlated stochastic activity of neuronal networks in response to external stimuli, with applications in many brain areas. However, when dealing with…

Disordered Systems and Neural Networks · Physics 2020-11-17 Gabriel Mahuas , Giulio Isacchini , Olivier Marre , Ulisse Ferrari , Thierry Mora