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The effective hydrodynamic radius is usually assumed to be a constant in testing the Stokes-Einstein relation by its variants. We have performed molecular dynamics simulations with ortho-terphenyl and Kob-Andersen model to examine the…

Soft Condensed Matter · Physics 2022-01-19 Gan Ren

In this work, we investigate the existence and uniqueness properties of a composite structure (multilayered) fluid interaction PDE system which arises in multi-physics problems, and particularly in biofluidic applications related to the…

Analysis of PDEs · Mathematics 2024-03-01 Pelin G. Geredeli

Dynamics of a coarse-grained model for the room-temperature ionic liquid, 1-ethyl-3-methylimidazolium hexafluorophosphate, couched in the united-atom site representation are studied via molecular dynamics simulations. The dynamically…

Soft Condensed Matter · Physics 2017-03-15 Daun Jeong , M. Y. Choi , Hyung. J. Kim , YounJoon Jung

Stochastic differential equations (SDEs) are a ubiquitous modeling framework that finds applications in physics, biology, engineering, social science, and finance. Due to the availability of large-scale data sets, there is growing interest…

Machine Learning · Statistics 2025-03-04 Ziheng Guo , James Greene , Ming Zhong

Supercooled water exhibits a breakdown of the Stokes-Einstein relation between the diffusion constant $D$ and the alpha relaxation time $\tau_{\alpha}$. For water simulated with the TIP5P and ST2 potentials, we find that the temperature of…

Soft Condensed Matter · Physics 2007-05-23 Pradeep Kumar , S. V. Buldyrev , S. R. Becker , P. H. Poole , F. W. Starr , H. E. Stanley

We examine the behavior of the diffusion coefficient of the ST2 model of water over a broad region of the phase diagram via molecular dynamics simulations. The ST2 model has an accessible liquid-liquid transition between low-density and…

Statistical Mechanics · Physics 2012-08-07 Peter H. Poole , Stephen R. Becker , Francesco Sciortino , Francis W. Starr

Seifert derived an exact fluctuation relation for diffusion processes using the concept of "stochastic system entropy". In this note we extend his formalism to entropic transport. We introduce the notion of relative stochastic entropy, or…

Statistical Mechanics · Physics 2012-11-30 Matteo Smerlak

This paper derives stochastic partial differential equations (SPDEs) for fluid dynamics from a stochastic variational principle (SVP). The Legendre transform of the Lagrangian formulation of these SPDEs yields their Lie-Poisson Hamiltonian…

Mathematical Physics · Physics 2015-08-19 Darryl D. Holm

We develop numerical methods for reaction-diffusion systems based on the equations of fluctuating hydrodynamics (FHD). While the FHD formulation is formally described by stochastic partial differential equations (SPDEs), it becomes similar…

Fluid Dynamics · Physics 2018-01-17 Changho Kim , Andy Nonaka , John B. Bell , Alejandro L. Garcia , Aleksandar Donev

We develop stochastic mixed finite element methods for spatially adaptive simulations of fluid-structure interactions when subject to thermal fluctuations. To account for thermal fluctuations, we introduce a discrete fluctuation-dissipation…

Mesoscale and Nanoscale Physics · Physics 2023-02-28 Pat Plunkett , Jon Hu , Chris Siefert , Paul J. Atzberger

The diffusion of glycerol molecules decreases with decreasing temperature as its viscosity increases in a manner simply described by the Stokes-Einstein(SE) relation. Approaching the glass transition, this relation breaks down as it does…

Disordered Systems and Neural Networks · Physics 2007-05-23 Bo Chen , Eric E. Sigmund , W. P. Halperin

Stochastic partial differential equations (SPDEs) represent a very active research field with numerous recent developments and breakthrough results. There are several well-established approaches and methods used to construct solutions for…

Probability · Mathematics 2019-08-27 Christian Kuehn , Alexandra Neamtu

Orientational and translational decouplings in ultraviscous glass forming glycerol and its nanocolloid based on Ag nanoparticles, as the function of temperature and pressure up to challenging P more than 1.5 GPa, are discussed. The analysis…

We numerically investigate the dynamics and linear rheology of disordered systems made of patchy particles, focussing on the role of valence, temperature and bonding mechanism. We demonstrate that the dynamics is enslaved to bonding, giving…

Soft Condensed Matter · Physics 2024-03-20 Samuel S. Gomez , Lorenzo Rovigatti

We perform molecular dynamics simulations using the extended simple point charge SPC/E water model in order to investigate the dynamical behavior of supercooled-stretched water. We focus on the behavior of the translational diffusion…

Statistical Mechanics · Physics 2007-05-23 P. A. Netz , F. Starr , M. C. Barbosa , H. Eugene Stanley

The Stokes-Einstein relation for the self-diffusion coefficient of a spherical particle suspended in an incompressible fluid is an asymptotic result in the limit of large Schmidt number, that is, when momentum diffuses much faster than the…

Soft Condensed Matter · Physics 2015-06-17 F. Balboa Usabiaga , X. Xie , R. Delgado-Buscalioni , A. Donev

In this work, we establish the so-called backward uniqiueness property for a coupled system of partial differential equations (PDEs) which governs a certain fluid-structure interaction. In particular, a three-dimensional Stokes flow…

Analysis of PDEs · Mathematics 2016-11-18 George Avalos , Thomas J. Clark

We investigate the dynamics of kinetically frozen block copolymer micelles of different softness across a wide range of particle concentrations, from the fluid to the onset of glassy behavior, through a combination of rheology, dynamic…

The celebrated Stokes Law (SL) of hydrodynamics predicts that the velocity of a particle pulled through a liquid by an external force, Fex, is directly proportional to the force and inversely proportional to the friction {\zeta} acted by…

Soft Condensed Matter · Physics 2024-02-27 Subhajit Acharya , Biman Bagchi

In this article we study (possibly degenerate) stochastic differential equations (SDE) with irregular (or discontiuous) coefficients, and prove that under certain conditions on the coefficients, there exists a unique almost everywhere…

Probability · Mathematics 2009-08-18 Xicheng Zhang