Related papers: Anisotropic Elastic Model for Short DNA Loops
Disordered solids often change their elastic response as they slowly age. Using experiments and simulations, we study how aging disordered planar networks under an applied stress affects their nonlinear elastic response. We are able to…
Single T4-DNA molecules were confined in rectangular-shaped channels with a depth of 300 nm and a width in the range 150-300 nm casted in a poly(dimethylsiloxane) nanofluidic chip. The extensions of the DNA molecules were measured with…
The holographic duality has proven successful in linking seemingly unrelated problems in physics.Recently, intriguing correspondences between the physics of soft matter and gravity are emerging,including strong similarities between the…
Orthotropic shell structures are ubiquitous in biology and engineering, from bacterial cell walls to reinforced domes. We present a rescaling transformation that maps an orthotropic shallow shell to an isotropic one with a different local…
A model of self-avoiding walk with suitable constraints on self-attraction is developed to describe the conformational behavior of a short RNA or a single stranded DNA molecule that forms hairpin structure and calculate the properties…
We study a 2D mesoscopic ring with an anisotropic effective mass considering surface quantum confinement effects. Consider that the ring is defined on the surface of a cone, which can be controlled topologically and mapped to the 2D ring in…
Naturally occurring protein fibers often undergo anisotropic swelling when hydrated. Within a tendon, a hydrated collagen fibril's radius expands by 40% but its length only increases by 5%. The same effect, with a similar relative…
We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…
We study the evolution of diffuse elastodynamic spectral energy density under the influence of weak nonlinearity. It is shown that the rate of change of this quantity is given by a convolution of the linear energy at two frequencies.…
The influence of surface anisotropy on the magnetization processes of maghemite nanoparticles with ellipsoidal shape is studied by means of Monte Carlo simulations. Radial surface anisotropy is found to favor the formation of hedgehog-like…
We implement extensive computer simulations to investigate the hysteresis characteristics in the ordered arrays ($l^{}_x\times l^{}_y$) of magnetic nanoparticles as a function of aspect ratio $A^{}_r=l^{}_y/l^{}_x$, dipolar interaction…
Using the Parsons Lee theory we examined the effect of shape anisotropy and the wall to wall separation on the phase behavior of the hard parallelepiped rods with dimensions L, D, and D (L>D) in such narrow slitlike pores which only one…
Polymers are a primary building block in many biomaterials, often interacting with anisotropic backgrounds. While previous studies have considered polymer dynamics within nematic solvents, rarely are the the effects of anisotropic viscosity…
Local entropic loss functions provide a versatile framework to define architecture-aware regularization procedures. Besides the possibility of being anisotropic in the synaptic space, the local entropic smoothening of the loss function can…
We investigate the geometrical and mechanical properties of adherent cells characterized by a highly anisotropic actin cytoskeleton. Using a combination of theoretical work and experiments on micropillar arrays, we demonstrate that the…
The in vivo free energy of looping double-stranded DNA by the lac repressor has a remarkable behavior whose origins are not fully understood. In addition to the intrinsic periodicity of the DNA double helix, the in vivo free energy has an…
By means of computer simulations of a coarse-grained DNA model we show that the DNA hairpin zippering dynamics is anomalous, i.e. the characteristic time T scales non-linearly with N, the hairpin length: T ~ N^a with a>1. This is in sharp…
A ribbon is a surface swept out by a line segment turning as it moves along a central curve. For narrow magnetic ribbons, for which the length of the line segment is much less than the length of the curve, the anisotropy induced by the…
Coarse-grained models have emerged as valuable tools to simulate long DNA molecules while maintaining computational efficiency. These models aim at preserving interactions among coarse-grained variables in a manner that mirrors the…
A spatially homogeneous and anisotropic Bianchi type I universe is studied with the interacting holographic and new agegraphic scalar fields models of dark energy. Given, the framework of the anisotropic model, both the dynamics and…