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We analyze a bubble forming system composed of particles with competing long range repulsive and short range attractive interactions driven over a quasi-one-dimensional periodic substrate. We find various pinned and sliding phases as a…

Soft Condensed Matter · Physics 2024-01-26 C. Reichhardt , C. J. O. Reichhardt

Protein structures are a very special class among all possible structures. It was suggested that a ``designability principle'' plays a crucial role in nature's selection of protein sequences and structures. Here we provide a theoretical…

Statistical Mechanics · Physics 2009-10-30 Hao Li , Chao Tang , Ned S. Wingreen

Capillary forces acting at the surface of a liquid drop can be strong enough to deform small objects and recent studies have provided several examples of elastic instabilities induced by surface tension. We present such an example where a…

Soft Condensed Matter · Physics 2017-04-14 Hervé Elettro , Paul Grandgeorge , Sébastien Neukirch

Binding interactions between proteins and other molecules mediate numerous cellular processes, including metabolism, signaling, and regulation of gene expression. These interactions evolve in response to changes in the protein's chemical or…

Populations and Evolution · Quantitative Biology 2015-02-19 Michael Manhart , Alexandre V. Morozov

The process of crystallization is often understood in terms of the fundamental microstructural elements of the crystallite being formed, such as surface orientation or the presence of defects. Considerably less is known about the role of…

Materials Science · Physics 2020-07-01 Rodrigo Freitas , Evan J. Reed

We report a molecular dynamics study of crystallization in highly asymmetric binary hard-sphere mixtures, in which the large spheres can form a crystal phase while the small ones remain disordered during the crystallization process of the…

Soft Condensed Matter · Physics 2015-05-28 Wen-Sheng Xu , Zhao-Yan Sun , Li-Jia An

This short review is devoted to the simple process of drying a multi-component droplet consisting of a complex fluid containing a salt. These processes provide a fascinating subject for study. The explanation of the rich variety of patterns…

Soft Condensed Matter · Physics 2016-11-04 Yuri Yu. Tarasevich , Sujata Tarafdar , Tapati Dutta

A fundamental goal of research in molecular biology is to understand protein structure. Protein crystallography is currently the most successful method for determining the three-dimensional (3D) conformation of a protein, yet it remains…

Artificial Intelligence · Computer Science 2014-11-17 L. Leherte , J. Glasgow , K. Baxter , E. Steeg , S. Fortier

Crystals are a state of matter characterised by periodic order. Yet crystalline materials can harbour disorder in many guises, such as non-repeating variations in composition, atom displacements, bonding arrangements, molecular…

Materials Science · Physics 2019-12-03 Arkadiy Simonov , Andrew L. Goodwin

The process of drying is a simple physical mechanism that drives a system to relax from one equilibrium point to another. The native states of the constituent particles in the droplets can be linked to the emergent morphological patterns…

Soft Condensed Matter · Physics 2021-05-14 Anusuya Pal , Amalesh Gope , Germano S. Iannacchione

Under partial wetting conditions, making a substrate uniformly rougher enhances the wetting characteristics of the corresponding smooth substrate {--} hydrophilic systems become even more hydrophilic and hydrophobic systems even more…

Soft Condensed Matter · Physics 2012-01-05 Zhenwei Yao , Mark J. Bowick

A fluid in a pore can form diverse heterogeneous structures. We combine a capillary description with the cubic-plus-association equation of state to study the thermodynamic stability of droplets, bubbles and films of water at 358 K in a…

Computational Physics · Physics 2019-09-04 Magnus Aa. Gjennestad , Øivind Wilhelmsen

Precipitation strengthening is one of the most effective methods to design alloys with the desired combination of strength and ductility. The main mechanism of strengthening is generally known to be the interaction between dislocations and…

Materials Science · Physics 2018-09-05 Amirreza Keyhani

The issue of the buckling mechanism in droplets stabilized by solid particles (armored droplets) is tackled at a mesoscopic level using dissipative particle dynamics simulations. We consider spherical water droplet in a decane solvent…

Soft Condensed Matter · Physics 2017-02-10 François Sicard , Alberto Striolo

Stability of lubricating fluid infused slippery surfaces is a concern for scientists and engineers and attempts are being made for its improvement. Lubricating oil coated slippery surface for aqueous drops is one of the important candidates…

Soft Condensed Matter · Physics 2016-08-24 Reeta Pant , Sanjeev Kumar Ujjain , Arun Kumar Nagarajan , Krishnacharya Khare

Various materials are made of long thin fibers that are randomly oriented to form a complex network in which drops of wetting liquid tend to accumulate at the nodes. The capillary force exerted by the liquid can bend flexible fibers, which…

Soft Condensed Matter · Physics 2016-10-11 Alban Sauret , Francois Boulogne , Katarzyna Somszor , Emilie Dressaire , Howard A. Stone

The numerical prediction of droplet base radius and contact angle depends on the choice of characteristic radius and height of droplet. In this study, a developed model on the basis of lubrication approximation is used to investigate the…

Fluid Dynamics · Physics 2017-08-01 Debanik Bhattacharjee , Hadi Nazaripoor , Mohtada Sadrzadeh

Sessile drying droplets manifest distinct morphological patterns, encompassing diverse systems viz., DNA, proteins, blood, and protein-liquid crystal (LC) complexes. This study employs an integrated methodology that combines drying droplet,…

Soft Condensed Matter · Physics 2024-01-23 Anusuya Pal , Amalesh Gope

Contact-drop dispensing is central to many small-scale applications, such as direct-scanning probe lithography and micromachined fountain-pen techniques. Accurate and controllable dispensing required for nanometer-resolved surface…

Soft Condensed Matter · Physics 2015-05-28 Amir Akbari , Reghan J. Hill , Theo G. M. van de Ven

Normal mode analysis offers an efficient way of modeling the conformational flexibility of protein structures. Simple models defined by contact topology, known as elastic network models, have been used to model a variety of systems, but the…

Biomolecules · Quantitative Biology 2007-05-23 Dmitry A. Kondrashov , Adam W. Van Wynsberghe , Ryan M. Bannen , Qiang Cui , George N. Phillips