Related papers: CSAW: a dynamical model of protein folding
A celebrated problem in numerical analysis is to consider Brownian motion originating at the centre of a $10 \times 1$ rectangle, and to evaluate the ratio of probabilities of a Brownian path hitting the short ends of the rectangle before…
This article is dedicated to the study of the 2-dimensional interacting prudent self-avoiding walk (referred to by the acronym IPSAW) and in particular to its collapse transition. The interaction intensity is denoted by $\beta>0$ and the…
Self-avoiding walks self-interacting via nearest neighbours (ISAW) and self-avoiding trails interacting via multiply-visited sites (ISAT) are two models of the polymer collapse transition of a polymer in dilute solution. On the square…
A fundamental paradigm in polymer physics is that macromolecular conformations in equilibrium can be described by universal scaling laws, being key for structure, dynamics, and function of soft (biological) matter and in the materials…
We demonstrate that the recently proposed interacting growth walk (IGW) model, modified for generating self-avoiding heteropolymers, proves to be a simpler alternative to the other Monte Carlo methods available in the literature for…
The scaling behavior of self-avoiding walks (SAWs) on the backbone of percolation clusters in two, three and four dimensions is studied by Monte Carlo simulations. We apply the pruned-enriched Rosenbluth chain-growth method (PERM). Our…
Simulations of the self-avoiding walk (SAW) are performed in a half-plane and a cut-plane (the complex plane with the positive real axis removed) using the pivot algorithm. We test the conjecture of Lawler, Schramm and Werner that the…
We propose an algorithm based on local growth rules for kinetically generating self avoiding walk configurations at any given temperature. This algorithm, called the Interacting Growth Walk (IGW) algorithm, does not suffer from attrition on…
Background: This study is mainly motivated by the need of understanding how the diffusion behaviour of a biomolecule (or even of a larger object) is affected by other moving macromolecules, organelles, and so on, inside a living cell,…
Continuous Time Random Walks (CTRW) are widely used to coarse-grain the evolution of systems jumping from a metastable sub-set of their configuration space, or trap, to another via rare intermittent events. The multi-scaled behavior typical…
A phase diagram for a surface-interacting long flexible polymer chain in a two-dimensional poor solvent where the possibility of collapse exists is determined using exact enumeration method. A model of a self-attracting self avoiding walk…
Oriented self-avoiding walks (OSAWs) on a square lattice are studied, with binding energies between steps that are oriented parallel across a face of the lattice. By means of exact enumeration and Monte Carlo simulation, we reconstruct the…
Standard continuous time random walk (CTRW) models are renewal processes in the sense that at each jump a new, independent pair of jump length and waiting time are chosen. Globally, anomalous diffusion emerges through action of the…
We consider a family of one-dimensional self interacting walks whose dynamics characterized by a monotone weight function $w$ on $\mathbb{N}\cup \{0\}$. The weight function takes the form $w(n) = (1 + 2^p Bn^{-p} + O(n^{-1-\kappa}))^{-1}$,…
We have explained in detail why the canonical partition function of Interacting Self Avoiding Walk (ISAW), is exactly equivalent to the configurational average of the weights associated with growth walks, such as the Interacting Growth Walk…
We consider Activated Random Walk (ARW), a particle system with mass conservation, on the cycle $\mathbb{Z}/n\mathbb{Z}$. One starts with a mass density $\mu>0$ of initially active particles, each of which performs a simple symmetric random…
The critical adsorption point (CAP) of self-avoiding walks (SAW) interacting with a planar surface with surface disorder or sequence disorder has been studied. We present theoretical equations, based on ones previously developed by Soteros…
In this paper, we investigate a model for a $1+1$ dimensional self-interacting and partially directed self-avoiding walk, usually referred to by the acronym IPDSAW. The interaction intensity and the free energy of the system are denoted by…
Brownian motion is a well-known model for normal diffusion, but not all physical phenomena behave according to a Brownian motion. Many phenomena exhibit irregular diffusive behavior, called anomalous diffusion. Examples of anomalous…
Self-avoiding walks and self-avoiding trails, two models of a polymer coil in dilute solution, have been shown to be governed by the same universality class. On the other hand, self-avoiding walks interacting via nearest-neighbour contacts…