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The fluid phase diagram of trimer particles composed of one central attractive bead and two repulsive beads was determined as a function of simple geometric parameters using flat-histogram Monte Carlo methods. A variety of self-assembled…

Soft Condensed Matter · Physics 2015-05-20 Harold W. Hatch , Jeetain Mittal , Vincent K. Shen

Molecular dimers are widely utilized as a tool to investigate the structure-property relationships behind the complex photophysical processes of condensed-phase systems, where structural tuning remains a challenge. This approach often…

Proteins form a very important class of polymers. In spite of major advances in the understanding of polymer science, the protein problem has remained largely unsolved. Here, we show that a polymer chain viewed as a tube not only captures…

Biological Physics · Physics 2007-05-23 J. R. Banavar , A. Flammini , D. Marenduzzo , A. Maritan , A. Trovato

We consider the large-time dynamics of one-dimensional processes involving adsorption and desorption of extended hard-core particles (dimers, trimers,\,$\cdots,k$-mers), while interacting through their constituent monomers. Desorption can…

Statistical Mechanics · Physics 2017-06-23 F. A. Gómez Albarracín , H. D. Rosales , M. D. Grynberg

Using scaled-particle theory for binary mixtures of two-dimensional hard particles with rotational freedom, we analyse the stability of nematic phases and the demixing phase behaviour of a variety of mixtures, focussing on cases where at…

Soft Condensed Matter · Physics 2009-11-13 D. de las Heras , Y. Martinez-Raton , E. Velasco

We study a two-dimensional fluid of particles interacting through a spherically-symmetric and marginally soft two-body repulsion. This model can exist in three different crystal phases, one of them with square symmetry and the other two…

Soft Condensed Matter · Physics 2012-09-13 Santi Prestipino , Franz Saija , Paolo V. Giaquinta

Hierarchically structured natural materials possess functionalities unattainable to the same components organized or mixed in simpler ways. For instance, the bones and teeth of mammals are far stronger and more durable than the mineral…

Soft Condensed Matter · Physics 2014-04-04 Thomas K. Haxton , Stephen Whitelam

We synthesized the liquid crystal dimer and trimer members of a series of flexible linear oligomers and characterized their microscopic and nanoscopic properties using resonant soft x-ray scattering and a number of other experimental…

Previous Monte Carlo investigations by Wojciechowski \emph{et al.} have found two unusual phases in two-dimensional systems of anisotropic hard particles: a tetratic phase of four-fold symmetry for hard squares [Comp. Methods in Science and…

Statistical Mechanics · Physics 2009-11-11 A. Donev , J. Burton , F. H. Stillinger , S. Torquato

Determining the structure of a protein has been a decades-long open question. A protein's three-dimensional structure often poses nontrivial computation costs, when classical simulation algorithms are utilized. Advances in the transformer…

Machine Learning · Computer Science 2023-10-09 Chen Dun , Qiutai Pan , Shikai Jin , Ria Stevens , Mitchell D. Miller , George N. Phillips, , Anastasios Kyrillidis

We show that two-dimensional systems of deformable particles undergo a continuous liquid-hexatic transition upon compression or cooling, but no hexatic-solid transition-even at zero temperature and high density. Numerical simulations reveal…

Soft Condensed Matter · Physics 2025-11-20 Jatin Kumar , Wu Zeng , Anshuman Pasupalak , Massimo Pica Ciamarra

The interaction of water with surfaces is crucially important in a wide range of natural and technological settings. In particular, at low temperatures, unveiling the atomistic structure of adsorbed water clusters would provide valuable…

Materials Science · Physics 2024-02-23 F. Priante , N. Oinonen , Y. Tian , D. Guan , C. Xu , S. Cai , P. Liljeroth , Y. Jiang , A. S. Foster

We numerically investigate two-dimensional systems of hard rectangles at constant pressure through extensive hard-particle Monte Carlo simulations. We determine the complete phase diagram as a function of packing fraction and aspect ratio,…

Soft Condensed Matter · Physics 2025-05-15 Denis Dertli , Thomas Speck

By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…

Biological Physics · Physics 2015-09-23 Matthew J. Williams , Michael Bachmann

A cascade of phase transitions from square to hexagonal lattice is studied in 2D system of particles interacting via core-softened potential. Due to the presence of two length-scales of repulsion, different local configurations with four,…

Soft Condensed Matter · Physics 2017-12-14 N. P. Kryuchkov , S. O. Yurchenko , Yu. D. Fomin , E. N. Tsiok , V. N. Ryzhov

The melting transition of two-dimensional (2D) systems is a fundamental problem in condensed matter and statistical physics that has advanced significantly through the application of computational resources and algorithms. 2D systems…

Soft Condensed Matter · Physics 2017-04-12 Joshua A. Anderson , James Antonaglia , Jaime A. Millan , Michael Engel , Sharon C. Glotzer

We study the phase diagram of a bilayer of antiparallel dipolar excitons with a 1:2 density ratio between the layers, as a function of temperature and density. Using quantum Monte Carlo simulations, we show that such a system supports the…

Mesoscale and Nanoscale Physics · Physics 2025-07-23 Pradyumna P. Belgaonkar , Michal Zimmerman , Snir Gazit , Dror Orgad

We investigate the local structural fluctuations of a model equilibrium fluid with an aim of better understanding the structural basis of locally heterogeneous dynamics identified in recent simulations and experimental studies of…

Soft Condensed Matter · Physics 2018-11-14 Tamoghna Das , Jack F. Douglas

Soft matter systems are common in nature and make up nearly all the essential components necessary for life, from cells to the organelles within those cells. The ability of these soft materials to deform is crucial for the proper…

Soft Condensed Matter · Physics 2025-12-02 Padmanabha Bose , Smarajit Karmakar

Atomically thin 2-dimensional heterostructures are a promising, novel class of materials with groundbreaking properties. The possiblity of choosing the many constituent components and their proportions allows optimizing these materials to…

Mesoscale and Nanoscale Physics · Physics 2019-10-23 Petri Hirvonen , Vili Heinonen , Haikuan Dong , Zheyong Fan , Ken R. Elder , Tapio Ala-Nissila
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