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We describe here in detail the recently introduced methodology for simulation of structural transitions in crystals. The applications of the new scheme are illustrated on various kinds of crystals and the advantages with respect to previous…

Materials Science · Physics 2007-05-23 R. Martonak , A. Laio , M. Bernasconi , C. Ceriani , P. Raiteri , M. Parrinello

Interface energy and kinetic coefficient of crystal growth strongly depend on the face of the crystalline lattice. To investigate the kinetic anisotropy and velocity of different crystallographic faces we use the hyperbolic (modified) phase…

Materials Science · Physics 2020-04-03 Vladimir Ankudinov , Peter K. Galenko

We study the meandering instability during growth of an isolated nanostructure, a crystalline cone, consisting of concentric circular steps. The onset of the instability is studied analytically within the framework of the standard…

Materials Science · Physics 2009-11-07 M. Rusanen , I. T. Koponen , T. Ala-Nissila

We model an apparent instability seen in recent experiments on current induced step bunching on Si(111) surfaces using a generalized 2D BCF model, where adatoms have a diffusion bias parallel to the step edges and there is an attachment…

Soft Condensed Matter · Physics 2009-10-31 Da-Jiang Liu , John D. Weeks , Daniel Kandel

The active Phase-Field-Crystal (aPFC) model combines elements of the Toner-Tu theory for self-propelled particles and the classical Phase-Field-Crystal (PFC) model that describes the transition between liquid to crystalline phases. In the…

Pattern Formation and Solitons · Physics 2021-02-25 Lukas Ophaus , Johannes Kirchner , Svetlana V. Gurevich , Uwe Thiele

The electronic quasiparticle structure of a ferromagnetic local moment film is investigated within the framework of the s-f model. For the special case of a single electron in an otherwise empty energy band being exchange coupled to a fully…

Strongly Correlated Electrons · Physics 2009-10-31 R. Schiller , W. Mueller , W. Nolting

We investigate the dynamics of cellular solidification patterns using three-dimensional phase-field simulations. The cells can organize into stable hexagonal patterns or exhibit unsteady evolutions. We identify the relevant secondary…

Materials Science · Physics 2009-11-07 Mathis Plapp , Marcus Dejmek

We study a recently proposed nonlinear evolution equation describing the collective step meander on a vicinal surface subject to the Bales-Zangwill growth instability [O. Pierre-Louis et al., Phys. Rev. Lett. (80), 4221 (1998)]. A careful…

Materials Science · Physics 2009-10-31 J. Kallunki , J. Krug

Advancements in understanding the lateral migration of particles have helped in enhanced separation in microfluidic devices. In this work, we investigate the effects of electrokinetics on the particle migration in a viscoelastic flow, where…

Soft Condensed Matter · Physics 2020-08-11 Akash Choudhary , Di Li , T. Renganathan , Xiangchun Xuan , S. Pushpavanam

We consider a free boundary model of epithelial cell migration with logistic growth and nonlinear diffusion induced by mechanical interactions. Using numerical simulations, phase plane and perturbation analysis, we find and analyse…

Pattern Formation and Solitons · Physics 2020-10-05 Ryan J Murphy , Pascal R Buenzli , Ruth E Baker , Matthew J Simpson

It is shown that step moving to meet solution flow can be unstable against lateral perturbations. The instability of long-wavelength perturbations occurs at values of the solution flow intensity less than some critical value depending on…

Condensed Matter · Physics 2009-10-28 Serge Yu. Potapenko

Nonequilibrium dynamics of biomembranes with active inclusions is considered. The inclusions represent protein molecules which perform cyclic internal conformational motions driven by the energy brought with ATP ligands. As protein…

Soft Condensed Matter · Physics 2015-05-13 Hsuan-Yi Chen , Alexander S. Mikhailov

The local structure study reveals important aspects of the physical properties, because it is closely related to the electronic structure. Standard crystallographic analysis based on a space group fails to observe disorder in the crystal…

Materials Science · Physics 2019-06-26 Shin-ichi Shamoto

Periodic field patterns of atoms and their charges/spins/orbits emerge in crystals, forming novel states of matter called emergent crystals (ECs). In recent years, they are observed in diverse systems such as skyrmion crystals in…

Applied Physics · Physics 2019-05-15 Yangfan Hu , Xuejin Wan

Stick-slip motion, a common phenomenon observed during crawling of cells, is found to be strongly sensitive to the substrate stiffness. Stick-slip behaviours have previously been investigated typically using purely elastic substrates. For a…

Biological Physics · Physics 2019-07-31 Partho Sakha De , Rumi De

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

We investigate the steady-state organisation of active particles residing on an interface. Particle activity induces interface deformations, while the local shape of the interface guides particle movement. We consider multiple species of…

Soft Condensed Matter · Physics 2025-05-28 Love Grover , Rajeev Kapri , Abhishek Chaudhuri

The ubiquitous phenomena of crystallization and melting occur in various geophysical contexts across many spatial and temporal scales. In particular, they take place in the iron core of terrestrial planets and moons, profoundly influencing…

Earth and Planetary Astrophysics · Physics 2025-05-16 Ludovic Huguet , Quentin Kriaa , Thierry Alboussière , Michael Le Bars

A new formulation of the Phase Field Crystal model is presented that is consistent with the necessary microscopic independence between the phase field, reflecting the broken symmetry of the phase, and both mass density and elastic…

Materials Science · Physics 2020-09-09 Amit Acharya , Jorge Viñals

We extend a lattice Boltzmann algorithm of liquid crystal hydrodynamics to include an applied electric field. The approach solves the equations of motion written in terms of a tensor order parameter. Back-flow effects and the hydrodynamics…

Soft Condensed Matter · Physics 2007-05-23 Colin Denniston , Geza Toth , Julia M. Yeomans