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Most biological systems are formed by component parts that to some degree are inter-related. Groups of parts that are more associated among themselves and are relatively autonomous from others are called modules. One of the consequences of…

Populations and Evolution · Quantitative Biology 2013-08-12 Gabriel Marroig , Diogo Melo , Guilherme Garcia

In this paper, we investigate the impact of noise on a simplified trained convolutional network. The types of noise studied originate from a real optical implementation of a neural network, but we generalize these types to enhance the…

Adaptation and Self-Organizing Systems · Physics 2025-06-24 Ivan Kolesnikov , Nadezhda Semenova

Anatomical studies demonstrate that brain reformats input information to generate reliable responses for performing computations. However, it remains unclear how neural circuits encode complex spatio-temporal patterns. We show that neural…

Neurons and Cognition · Quantitative Biology 2018-02-20 Priyadarshini Panda , Kaushik Roy

Fluctuations and noise may alter the behavior of dynamical systems considerably. For example, oscillations may be sustained by demographic fluctuations in biological systems where a stable fixed point is found in the absence of noise. We…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 Richard P. Boland , Tobias Galla , Alan J. McKane

It is well known that the kinetics of an intracellular biochemical network is stochastic. This is due to intrinsic noise arising from the random timing of biochemical reactions in the network as well as due to extrinsic noise stemming from…

Subcellular Processes · Quantitative Biology 2019-06-05 Emma M. Keizer , Bjorn Bastian , Robert W. Smith , Ramon Grima , Christian Fleck

Microscopic structural damage, such as lesions in neural systems or disruptions in urban transportation networks, can impair the dynamics crucial for systems' functionality, such as electrochemical signals or human flows, or any other type…

Physics and Society · Physics 2022-02-22 Arsham Ghavasieh , Giulia Bertagnolli , Manlio De Domenico

We analyze transport on a graph with multiple constraints and where the weight of the edges connecting the nodes is a dynamical variable. The network dynamics results from the interplay between a nonlinear function of the flow, dissipation,…

Statistical Mechanics · Physics 2023-11-28 Frederic Folz , Kurt Mehlhorn , Giovanna Morigi

ABBREVIATED ABSTRACT: This paper summarises an investigation of the effects of weak friction and noise in time-independent, nonintegrable potentials which admit both regular and stochastic orbits. The aim is to understand the qualitative…

Astrophysics · Physics 2009-10-22 Salman Habib , Henry E. Kandrup , M. Elaine Mahon

We consider a one-dimensional directional array of diffusively coupled oscillators. They are perturbed by the injection of a small additive noise, typically orders of magnitude smaller than the oscillation amplitude, and the system is…

Disordered Systems and Neural Networks · Physics 2019-01-09 Clement Zankoc , Duccio Fanelli , Francesco Ginelli , Roberto Livi

Recent research has shown the deep impact of the dynamics of human interactions (or temporal social networks) on the spreading of information, opinion formation, etc. In general, the bursty nature of human interactions lowers the…

Physics and Society · Physics 2015-06-16 Giovanna Miritello , Rubén Lara , Esteban Moro

The interplay between nonlinear dynamic systems and noise has proved to be of great relevance in several application areas. In this presentation, we focus on the areas of information transmission and storage. We review some recent results…

Other Condensed Matter · Physics 2017-11-22 P. I. Fierens , G. A. Patterson , A. A. García , D. F. Grosz

We study the effect of topology variation on the dynamic behavior of a system with local update rules. We implement one-dimensional binary cellular automata on graphs with various topologies by formulating two sets of degree-dependent…

Statistical Mechanics · Physics 2009-11-11 Carsten Marr , Marc-Thorsten Huett

Fluctuations in the abundance of molecules in the living cell may affect its growth and well being. For regulatory molecules (e.g., signaling proteins or transcription factors), fluctuations in their expression can affect the levels of…

Molecular Networks · Quantitative Biology 2009-11-13 Erel Levine , Terence Hwa

We study the effect of memory on synchronization of identical chaotic systems driven by common external noises. Our examples show that while in general synchronization transition becomes more difficult to meet when memory range increases,…

Chaotic Dynamics · Physics 2009-11-11 Rafael Morgado , Michal Ciesla , Lech Longa , Fernando A. Oliveira

We consider binary infinite order stochastic chains perturbed by a random noise. This means that at each time step, the value assumed by the chain can be randomly and independently flipped with a small fixed probability. We show that the…

Probability · Mathematics 2007-07-20 Pierre Collet , Antonio Galves , Florencia G. Leonardi

Large populations of globally-coupled identical maps subjected to independent additive noise are shown to undergo qualitative changes as the features of the stochastic process are varied. We show that for strong coupling, the collective…

Statistical Mechanics · Physics 2009-11-10 Silvia De Monte , Francesco d'Ovidio , Hugues Chaté , Erik Mosekilde

For cellular biochemical reaction systems where the numbers of molecules is small, significant noise is associated with chemical reaction events. This molecular noise can give rise to behavior that is very different from the predictions of…

Molecular Networks · Quantitative Biology 2009-11-13 Matthew Scott , Terence Hwa , Brian Ingalls

Sensory neurons give highly variable responses to stimulation, which can limit the amount of stimulus information available to downstream circuits. Much work has investigated the factors that affect the amount of information encoded in…

Neurons and Cognition · Quantitative Biology 2017-04-20 Joel Zylberberg , Alexandre Pouget , Peter E. Latham , Eric Shea-Brown

We study the interplay between structural and conductivity (composite) disorder and the collective electrical response in random networks models. Translating the problem of time-dependent electrical response (resonance and transient…

Disordered Systems and Neural Networks · Physics 2010-02-03 R. Huang , G. Korniss , S. K. Nayak

Communication is compositional if complex signals can be represented as a combination of simpler subparts. In this paper, we theoretically show that inductive biases on both the training framework and the data are needed to develop a…

Machine Learning · Computer Science 2024-04-04 Łukasz Kuciński , Tomasz Korbak , Paweł Kołodziej , Piotr Miłoś