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In this paper, we explore osmotic transport by means of molecular dynamics (MD) simulations. We first consider osmosis through a membrane, and investigate the reflection coefficient of an imperfectly semi-permeable membrane, in the dilute…

Mesoscale and Nanoscale Physics · Physics 2017-05-18 Hiroaki Yoshida , Sophie Marbach , Lydéric Bocquet

Biological assemblies such as chromosomes, membranes, and the cytoskeleton are driven out of equilibrium at the nanoscale by enzymatic activity and molecular motors. Similar non-equilibrium dynamics can be realized in synthetic systems,…

Biological Physics · Physics 2020-06-04 Federica Mura , Grzegorz Gradziuk , Chase P. Broedersz

Regarding lightweighting structures for aeronautics, automotive or construction applications, the level of performance of solutions proposed in terms of damping and isolation is fundamental. Hence multilayered plate appears as an…

Classical Physics · Physics 2012-10-22 Kerem Ege , Thibault Boncompagne , Bernard Laulagnet , Jean-Louis Guyader

We present a numerical study of the slip link model introduced by Likhtman for describing the dy- namics of dense polymer melts. After reviewing the technical aspects associated with the implemen- tation of the model, we extend previous…

Soft Condensed Matter · Physics 2013-06-11 Diego Delbiondo , Elian Masnada , Samy Merabia , Marc Couty , Jean-Louis Barrat

The study of the noise induced effects on the dynamics of a chain molecule crossing a potential barrier, in the presence of a metastable state, is presented. A two-dimensional stochastic version of the Rouse model for a flexible polymer has…

Statistical Mechanics · Physics 2015-05-13 N. Pizzolato , A. Fiasconaro , B. Spagnolo

In this paper we apply the methodology based on the analysis of changes in acoustic wave velocities under static stress for measurements of the third-order elastic moduli in three polystyrene-based nanocomposites with different fillers:…

Disordered Systems and Neural Networks · Physics 2020-05-05 A. V. Belashov , Y. M. Beltukov , O. A. Moskalyuk , I. V. Semenova

We present molecular dynamics simulations of mono- or bidisperse inelastic granular gases driven by vibrating walls, in two dimensions (without gravity). Because of the energy injection at the boundaries, a situation often met…

Statistical Mechanics · Physics 2009-11-07 Alain Barrat , Emmanuel Trizac

We present molecular dynamics simulations on the structural relaxation of a simple bead-spring model for polymer blends. The introduction of a different monomer size induces a large time scale separation for the dynamics of the two…

Soft Condensed Matter · Physics 2009-11-13 A. J. Moreno , J. Colmenero

We introduce a \textit{non-modal} analysis technique that characterizes the diffusion properties of spectral element methods for linear convection-diffusion systems. While strictly speaking only valid for linear problems, the analysis is…

Computational Physics · Physics 2019-01-30 Pablo Fernandez , Rodrigo Moura , Gianmarco Mengaldo , Jaime Peraire

Nonequilibrium molecular dynamics simulations are used to study the deformation behavior of disperse polymer melts by tracking test chains of length N = Mw, the weight average molecular weight, in melts of varying dispersity. At high strain…

Soft Condensed Matter · Physics 2025-07-29 Taofeek Tejuosho , Janani Sampath

We present applications of variational -- wavelet approach to three different models of nonlinear beam motions with underlying collective behaviour: Vlasov-Maxwell-Poisson systems, envelope dynamics, beam-beam model. We have the…

Accelerator Physics · Physics 2007-05-23 Antonina N. Fedorova , Michael G. Zeitlin

This article presents a modeling framework for a class of multiphase chemical systems based on non-equilibrium thermodynamics. Compartmental modeling is used to establish the dynamic properties of liquid-vapor systems operating far from…

Statistical Mechanics · Physics 2019-02-15 Aaron Romo-Hernandez , Nicolas Hudon , B. Erik Ydstie , Denis Dochain

Molecular dynamics simulations are used to study structure formation in simple model polymer chains that are subject to excluded volume and torsional interactions. The changing conformations exhibited by chains of different lengths under…

Soft Condensed Matter · Physics 2009-11-07 D. C. Rapaport

Properties of 1,4-\textit{trans} poly (isoprene) at ambient conditions are determined by simulations on two length scales based on two different models: a full-atomistic and a mesoscopic one. The models are linked via a mapping scheme such…

Soft Condensed Matter · Physics 2009-11-07 Roland Faller , Dirk Reith

We present an extensive analysis of the relaxation dynamics of entangled linear polymer melts via long-time molecular dynamics simulations of a generic bead-spring model. We study the mean-squared displacements, the autocorrelation function…

Soft Condensed Matter · Physics 2025-01-17 Alireza F. Behbahani , Friederike Schmid

This paper presents a generalization of Murnaghan elastic material to viscoelastic behavior using the Green-Rivlin multiple-integral approach. In the linear limit, the model coincides with the generalized Maxwell model. To create a…

Soft Condensed Matter · Physics 2024-01-08 F. E. Garbuzov , Y. M. Beltukov

Active polymeric systems exhibit a rich spectrum of non-equilibrium phenomena arising from stochastic forces that explicitly break detailed balance. Despite the rapid growth of experimental and numerical studies, analytical progress remains…

Soft Condensed Matter · Physics 2026-03-09 Takahiro Sakaue , Enrico Carlon

In this paper we study newly developed methods for linear elasticity on polyhedral meshes. Our emphasis is on applications of the methods to geological models. Models of subsurface, and in particular sedimentary rocks, naturally lead to…

Numerical Analysis · Mathematics 2016-04-29 Nilsen Halvor , Nordbotten Jan , Raynaud Xavier

Using confocal microscopy, we measure the packing geometry and interdroplet forces as a function of the osmotic pressure in a 3D emulsion system. We find that the nonlinear elastic response of the pressure with density is not a result of…

Soft Condensed Matter · Physics 2015-06-11 Ivane Jorjadze , Lea-Laetitia Pontani , Jasna Brujic

We study the viscoelasticity of surface polymer monolayers by measuring the dynamics of thermal concentration fluctuations with surface light scattering. For various systems of proteins and synthetic polymers we find a semi-dilute regime in…

Soft Condensed Matter · Physics 2009-11-10 Pietro Cicuta , Ian Hopkinson