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Using each node's degree as a proxy for its importance, the topological hierarchy of a complex network is introduced and quantified. We propose a simple dynamical process used to construct networks which are either maximally or minimally…

Soft Condensed Matter · Physics 2008-06-24 Ala Trusina , Sergei Maslov , Petter Minnhagen , Kim Sneppen

We study network properties of networks evolving in time based on optimal transport principles. These evolve from a structure covering uniformly a continuous space towards an optimal design in terms of optimal transport theory. At…

Physics and Society · Physics 2023-10-25 Diego Baptista , Caterina De Bacco

Biological systems rely on robust internal information processing: Survival depends on highly reproducible dynamics of regulatory processes. Biological information processing elements, however, are intrinsically noisy (genetic switches,…

Molecular Networks · Quantitative Biology 2009-11-10 Konstantin Klemm , Stefan Bornholdt

The mutual information, I, of the three-state neural network can be obtained exactly for the mean-field architecture, as a function of three macroscopic parameters: the overlap, the neural activity and the {\em activity-overlap}, i.e. the…

Statistical Mechanics · Physics 2007-05-23 David R. Dominguez Carreta , Elka Korutcheva

We examine numerically the storage capacity and the behaviour near saturation of an attractor neural network consisting of bistable elements with an adjustable coupling strength, the Bistable Gradient Network (BGN). For strong coupling, we…

Disordered Systems and Neural Networks · Physics 2009-11-07 Patrick N. McGraw , Michael Menzinger

We study a model of associative memory based on a neural network with small-world structure. The efficacy of the network to retrieve one of the stored patterns exhibits a phase transition at a finite value of the disorder. The more ordered…

Adaptation and Self-Organizing Systems · Physics 2009-11-10 Luis G. Morelli , Guillermo Abramson , Marcelo N. Kuperman

Learning a graph topology to reveal the underlying relationship between data entities plays an important role in various machine learning and data analysis tasks. Under the assumption that structured data vary smoothly over a graph, the…

Machine Learning · Statistics 2023-08-23 Xingyue Pu , Tianyue Cao , Xiaoyun Zhang , Xiaowen Dong , Siheng Chen

In this work we propose a computational scheme inspired by the workings of human cognition. We embed some fundamental aspects of the human cognitive system into this scheme in order to obtain a minimization of computational resources and…

Physics and Society · Physics 2015-03-20 Daniel Borkmann , Andrea Guazzini , Emanuele Massaro , Stefan Rudolph

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera

Let $N$ local decision makers in a sensor network communicate with their neighbors to reach a decision \emph{consensus}. Communication is local, among neighboring sensors only, through noiseless or noisy links. We study the design of the…

Information Theory · Computer Science 2007-07-13 Soummya Kar , Saeed Aldosari , José M. F. Moura

Topological data analysis is a powerful tool for describing topological signatures in real world data. An important challenge in topological data analysis is matching significant topological signals across distinct systems. In geometry and…

Algebraic Topology · Mathematics 2025-02-19 Stephen Y Zhang , Michael P H Stumpf , Tom Needham , Agnese Barbensi

A recurrent neural network model storing multiple spatial maps, or ``charts'', is analyzed. A network of this type has been suggested as a model for the origin of place cells in the hippocampus of rodents. The extremely diluted and fully…

Disordered Systems and Neural Networks · Physics 2009-10-31 Francesco P. Battaglia , Alessandro Treves

We introduce a flexible setup allowing for a neural network to learn both its size and topology during the course of a standard gradient-based training. The resulting network has the structure of a graph tailored to the particular learning…

Machine Learning · Computer Science 2020-07-16 Romuald A. Janik , Aleksandra Nowak

In this work we evaluate the excitation and measurement patterns (EMP) for networks with tree topology. We investigate guidelines for the selection of the minimal EMPs, i.e. those with the least number of excited and measured nodes…

Physics and Society · Physics 2026-05-14 Eduardo Mapurunga , Alexandre Sanfelici Bazanella

Community structure discovery in complex networks is a quite challenging problem spanning many applications in various disciplines such as biology, social network and physics. Emerging from various approaches numerous algorithms have been…

Social and Information Networks · Computer Science 2012-08-16 Günce Keziban Orman , Vincent Labatut , Hocine Cherifi

Graph neural networks (GNNs) have emerged as a powerful tool for graph classification and representation learning. However, GNNs tend to suffer from over-smoothing problems and are vulnerable to graph perturbations. To address these…

Machine Learning · Computer Science 2021-11-01 Yuzhou Chen , Baris Coskunuzer , Yulia R. Gel

In this article, we propose a growing network model based on an optimal policy involving both topological and geographical measures. In this model, at each time step, a new node, having randomly assigned coordinates in a $1 \times 1$…

Physics and Society · Physics 2007-05-23 Yan-Bo Xie , Tao Zhou , Wen-Jie Bai , Guanrong Chen , Wei-Ke Xiao , Bing-Hong Wang

We use topological data analysis and machine learning to study a seminal model of collective motion in biology [D'Orsogna et al., Phys. Rev. Lett. 96 (2006)]. This model describes agents interacting nonlinearly via attractive-repulsive…

A framework integrating information theory and network science is proposed, giving rise to a potentially new area. By incorporating and integrating concepts such as complexity, coding, topological projections and network dynamics, the…

Information Theory · Computer Science 2019-04-10 Henrique F. de Arruda , Filipi N. Silva , Cesar H. Comin , Diego R. Amancio , Luciano da F. Costa

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

Quantitative Methods · Quantitative Biology 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett