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Formation of a molecular network from multifunctional precursors is modelled with a random graph process. The random graph model favours reactivity for monomers that are positioned close in the network topology, and disfavours reactivity…

Soft Condensed Matter · Physics 2019-08-21 Ivan Kryven , Jorien Duivenvoorden , Joen Hermans , Piet D. Iedema

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

Commonly, learning-based topological navigation approaches produce a local policy while preserving some loose connectivity of the space through a topological map. Nevertheless, spurious or missing edges in the topological graph often lead…

Robotics · Computer Science 2022-07-12 Rey Reza Wiyatno , Anqi Xu , Liam Paull

Many real life networks present an average path length logarithmic with the number of nodes and a degree distribution which follows a power law. Often these networks have also a modular and self-similar structure and, in some cases -…

Statistical Mechanics · Physics 2009-02-26 Alicia Miralles , Lichao Chen , Zhongzhi Zhang , Francesc Comellas

It was recently shown how graphs can be used to provide descriptions of psychopathologies, where symptoms of, say, depression, affect each other and certain configurations determine whether someone could fall into a sudden depression. To…

Applications · Statistics 2017-04-21 Lourens J. Waldorp , Jolanda J. Kossakowski

Recent developments in network neuroscience have highlighted the importance of developing techniques for analyzing and modeling brain networks. A particularly powerful approach for studying complex neural systems is to formulate generative…

Neurons and Cognition · Quantitative Biology 2022-09-09 Viplove Arora , Enrico Amico , Joaquín Goñi , Mario Ventresca

The ability to reroute and control flow is vital to the function of venation networks across a wide range of organisms. By modifying individual edges in these networks, either by adjusting edge conductances or creating and destroying edges,…

Soft Condensed Matter · Physics 2021-01-14 Jason W. Rocks , Andrea J. Liu , Eleni Katifori

Designing algorithms that generate networks with a given degree sequence while varying both subgraph composition and distribution of subgraphs around nodes is an important but challenging research problem. Current algorithms lack control of…

Physics and Society · Physics 2015-12-07 Martin Ritchie , Luc Berthouze , Istvan Z Kiss

In random cellular systems, both observation and maximum entropy inference give a specific form to the topological pair correlation: it is bi-affine in the cells number of edges with coefficients depending on the distance between the two…

Soft Condensed Matter · Physics 2007-09-14 Faez Miri , Christophe Oguey

We construct algorithms and topological invariants that allow us to distinguish the topological type of a surface, as well as functions and vector fields for their topological equivalence. In the first part we discus the main structures…

Dynamical Systems · Mathematics 2025-01-28 Alexandr Prishlyak

The theory of complex networks and of disordered systems is used to study the stability and dynamical properties of a simple model of material flow networks defined on random graphs. In particular we address instabilities that are…

Disordered Systems and Neural Networks · Physics 2009-11-13 Kartik Anand , Tobias Galla

Power grids are undergoing major changes from a few large producers to smart grids build upon renewable energies. Mathematical models for power grid dynamics have to be adapted to capture, when dynamic nodes can achieve synchronization to a…

Dynamical Systems · Mathematics 2018-07-11 Christian Kuehn , Sebastian Throm

A transition from asymmetric to symmetric patterns in time-dependent extended systems is described. It is found that one dimensional cellular automata, started from fully random initial conditions, can be forced to evolve into complex…

Cellular Automata and Lattice Gases · Physics 2007-05-23 J. R. Sanchez , R. Lopez-Ruiz

We consider two relatively natural topologizations of the set of all cellular automata on a fixed alphabet. The first turns out to be rather pathological, in that the countable space becomes neither first-countable nor sequential. Also,…

Cellular Automata and Lattice Gases · Physics 2012-08-15 Ville Salo , Ilkka Törmä

Topological invariants have proved useful for analyzing emergent function as they characterize a property of the entire system, and are insensitive to local details, disorder, and noise. They support boundary states, which reduce the system…

Statistical Mechanics · Physics 2025-10-10 Jaime Agudo-Canalejo , Evelyn Tang

The topology of a network directly influences the behaviour and controllability of dynamical processes on that network. Therefore, the design of network topologies is an important area of research when examining the control of distributed…

Optimization and Control · Mathematics 2016-09-29 Mathias Hudoba de Badyn , Mehran Mesbahi

Criticality has been conjectured as an integral part of neuronal network dynamics. Operating at a critical threshold requires precise parameter tuning and a corresponding mechanism remains an open question. Recent studies have suggested…

Neurons and Cognition · Quantitative Biology 2021-04-19 Nikita Gutjahr , Philipp Hövel , Aline Viol

Connectivity patterns of relevance in neuroscience and systems biology can be encoded in hierarchical modular networks (HMNs). Moreover, recent studies highlight the role of hierarchical modular organization in shaping brain activity…

Disordered Systems and Neural Networks · Physics 2017-11-22 Ali Safari , Paolo Moretti , Miguel A. Muñoz

The learnability of different neural architectures can be characterized directly by computable measures of data complexity. In this paper, we reframe the problem of architecture selection as understanding how data determines the most…

Machine Learning · Computer Science 2018-02-14 William H. Guss , Ruslan Salakhutdinov

Topological defects, which are singular points in a director field, play a major role in shaping active systems. Here, we experimentally study topological defects and the flow patterns around them, that are formed during the highly rapid…

Soft Condensed Matter · Physics 2024-03-20 Victor Yashunsky , Daniel J. G. Pearce , Gil Ariel , Avraham Be'er