Related papers: How to count trees?
We introduce new methods for phylogenetic tree quartet construction by using machine learning to optimize the power of phylogenetic invariants. Phylogenetic invariants are polynomials in the joint probabilities which vanish under a model of…
We describe in this note a new invariant of rooted trees. We argue that the invariant is interesting on it own, and that it has connections to knot theory and homological algebra. However, the real reason that we propose this invariant to…
An L(2, 1)-labeling of a graph is an assignment of nonnegative integers to the vertices of G such that adjacent vertices receive numbers differed by at least 2, and vertices at distance 2 are assigned distinct numbers. The L(2, 1)-labeling…
Counting non-isomorphic tree-like multigraphs that include self-loops and multiple edges is an important problem in combinatorial enumeration, with applications in chemical graph theory, polymer science, and network modeling. Traditional…
This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…
Consider jointly Gaussian random variables whose conditional independence structure is specified by a graphical model. If we observe realizations of the variables, we can compute the covariance matrix, and it is well known that the support…
Lajos Takacs gave a somewhat formidable alternating sum formula for the number of forests of unrooted trees on $n$ labeled vertices. Here we use a weight-reversing involution on suitable tree configurations to give a combinatorial…
We discuss a recursive formula for number of spanning trees in a graph. The paper is written primary for school students.
We consider labelings of a finite regular tree by a finite alphabet subject to restrictions specified by a nonnegative transition matrix, propose an algorithm for determining whether the set of possible configurations on the last row of the…
Several hook summation formulae for binary trees have appeared recently in the literature. In this paper we present an analogous formula for unordered increasing trees of size r, which involves r parameters. The right-hand side can be…
We define an algorithm k which takes a connected graph G on a totally ordered vertex set and returns an increasing tree R (which is not necessarily a subtree of G). We characterize the set of graphs G such that k(G)=R. Because this set has…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
We investigate the number of permutations that occur in random labellings of trees. This is a generalisation of the number of subpermutations occurring in a random permutation. It also generalises some recent results on the number of…
A subtree can be induced in a natural way by a subset of leaves of a rooted tree. We study the number of nonisomorphic such subtrees induced by leaves (leaf-induced subtrees) of a rooted tree with no vertex of outdegree 1 (topological…
Based on previous results of digital topology, this paper focuses on algorithms of topological invariants of objects in 2D and 3D Digital Spaces. We specifically interest in solving hole counting of 2D objects and genus of closed surface in…
In this paper, we propose a compositional nonparametric method in which a model is expressed as a labeled binary tree of $2k+1$ nodes, where each node is either a summation, a multiplication, or the application of one of the $q$ basis…
Rooted bifurcating trees are mathematical objects used to model evolutionary relationships and arise naturally in both coalescent theory and phylogenetics. Recent numerical representations of tree topologies, known as F-matrices, allow for…
An out-tree $T$ is an oriented tree with only one vertex of in-degree zero. A vertex $x$ of $T$ is internal if its out-degree is positive. We design randomized and deterministic algorithms for deciding whether an input digraph contains a…
We present a simplified exposition of some classical and modern results on graph drawings in the plane. These results are chosen so that they illustrate some spectacular recent higher-dimensional results on the border of topology and…
The degree distribution of an ordered tree $T$ with $n$ nodes is $\vec{n} = (n_0,\ldots,n_{n-1})$, where $n_i$ is the number of nodes in $T$ with $i$ children. Let $\mathcal{N}(\vec{n})$ be the number of trees with degree distribution…