Related papers: How to count trees?

We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…

We give a short proof of Cayley's tree formula for counting the number of different labeled trees on $n$ vertices. The following nonlinear recursive relation for the number of labeled trees on $n$ vertices is deduced from a combinatorial…

We introduce a new way to tabulate knots by representing knot diagrams using a pair of planar trees. This pair of trees have their edges labeled by integers, they have no valence 2 vertices, and they have the same number of valence 1…

We count unlabeled k-trees by properly coloring them in k+1 colors and then counting orbits of these colorings under the action of the symmetric group on the colors.

In this paper, we refer to a asymptotic degree sequence as $\mathscr{D}=(d_1,d_2,\dots,d_n)$. The examination of topological indices on trees gives us a general overview through bounds to find the maximum and minimum bounds which reflect…

Variable trees are a new method for the exploration of discrete multivariate data. They display nested subsets and corresponding frequencies and percentages. Manual calculation of these quantities can be laborious, especially when there are…

Kondo et al. (DS 2014) proposed methods for computing distances between unordered rooted trees by transforming an instance of the distance computing problem into an instance of the integer programming problem. They showed that the tree edit…

In this paper, we provide algorithms to rank and unrank certain degree-restricted classes of Cayley trees (spanning trees of the n-vertex complete graph). Specifically, we consider classes of trees that have a given set of leaves or a fixed…

The algebra of invariants of d-tuples of n x n skew-symmetric matrices under the action of the orthogonal group by simultaneous conjugation is considered over an infinite field of characteristic different from two. For n=3 and d>0 a minimal…

In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…

Subgraph counting aims to count occurrences of a template T in a given network G(V, E). It is a powerful graph analysis tool and has found real-world applications in diverse domains. Scaling subgraph counting problems is known to be memory…

The number of topologically different plane real algebraic curves of a given degree $d$ has the form $\exp(C d^2 + o(d^2))$. We determine the best available upper bound for the constant $C$. This bound follows from Arnold inequalities on…

Let T be a weighted tree with n numbered leaves and let D be its distance matrix, so D(i,j) is the distance between the leaves i and j. If m is an integer between 2 and n, we prove a tropical formula to compute the m-dissimilarity map of T…

A $k$-plane tree is a plane tree whose vertices are assigned labels between $1$ and $k$ in such a way that the sum of the labels along any edge is no greater than $k+1$. These trees are known to be related to $(k+1)$-ary trees, and they are…

Let $n>1$ be an integer, and let $T$ be a tree with $n+1$ vertices $v_1,\ldots,v_{n+1}$, where $v_1$ and $v_{n+1}$ are two leaves of $T$. For each edge $e$ of $T$, assign a complex number $w(e)$ as its weight. We obtain that…

A metric phylogenetic tree relating a collection of taxa induces weighted rooted triples and weighted quartets for all subsets of three and four taxa, respectively. New intertaxon distances are defined that can be calculated from these…

$U(N)^{\otimes r} \otimes O(N)^{\otimes q}$ invariants are constructed by contractions of complex tensors of order $r+q$, also denoted $(r,q)$. These tensors transform under $r$ fundamental representations of the unitary group $U(N)$ and…

A celebrated result of Otter says the number of distinct unlabelled spanning trees in $K_n$ is $\alpha^n$ up to subexponential factors for an absolute constant $\alpha>0$. In this note, we prove that for every $0<\varepsilon<\alpha$, there…

The input to the agreement problem is a collection $P = \{T_1, T_2, \dots , T_k\}$ of phylogenetic trees, called input trees, over partially overlapping sets of taxa. The question is whether there exists a tree $T$, called an agreement…

We present an algorithm that, on input $n$, lists every unlabeled tree of order $n$.