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Diffusion of a tagged particle near a constraining biological surface is examined numerically by modeling the surface-water interaction by an effective potential. The effective potential is assumed to be given by an asymmetric double well…

Soft Condensed Matter · Physics 2007-05-23 Arnab Mukherjee , Biman Bagchi

We study 2D fronts propagating up a co-moving reaction rate gradient in finite number reaction-diffusion systems. We show that in a 2D rectangular channel, planar solutions to the deterministic mean-field equation are stable with respect to…

Statistical Mechanics · Physics 2009-11-11 C. Scott Wylie , Herbert Levine , David A. Kessler

This paper establishes the spectral stability of monotone, stationary front solutions for reaction-diffusion equations where the reaction function is of Nagumo (or bistable) type and with diffusion coefficients which are density dependent…

Analysis of PDEs · Mathematics 2025-12-15 Raffaele Folino , César A. Hernández Melo , Luis F. López Ríos , Ramón G. Plaza

We derive and analyze new diffusion approximations of stationary distributions of Markov chains that are based on second- and higher-order terms in the expansion of the Markov chain generator. Our approximations achieve a higher degree of…

Probability · Mathematics 2022-07-12 Anton Braverman , J. G. Dai , Xiao Fang

Stochasticity plays important roles in reaction systems. Vector fields of probability flux and velocity characterize time-varying and steady-state properties of these systems, including high probability paths, barriers, checkpoints among…

Molecular Networks · Quantitative Biology 2018-12-05 Anna Terebus , Chun Liu , Jie Liang

We study the motion of N=2 overdamped Brownian particles in gravitational interaction in a space of dimension d=2. This is equivalent to the simplified motion of two biological entities interacting via chemotaxis when time delay and…

Statistical Mechanics · Physics 2015-05-14 P. H. Chavanis , R. Mannella

This paper develops a two-level fourth-order scheme for solving time-fractional convection-diffusion-reaction equation with variable coefficients subjected to suitable initial and boundary conditions. The basis properties of the new…

Numerical Analysis · Mathematics 2022-04-20 Eric Ngondiep

A general system of n ordinary differential equations coupled with one reaction-diffusion equation, considered in a bounded N-dimensional domain, with no-flux boundary condition is studied in a context of pattern formation. Such initial…

Analysis of PDEs · Mathematics 2023-04-14 Szymon Cygan , Grzegorz Karch , Anna Marciniak-Czochra , Kanako Suzuki

Localized patterns in singularly perturbed reaction-diffusion equations typically consist of slow parts -- in which the associated solution follows an orbit on a slow manifold in a reduced spatial dynamical system -- alternated by fast…

Analysis of PDEs · Mathematics 2022-07-13 Arjen Doelman

In this study a stabilized finite element method for solving advection-diffusion-reaction equation with spatially variable coefficients has been carried out. Here subgrid scale approach along with algebraic approximation to the sub-scales…

Analysis of PDEs · Mathematics 2018-12-18 Manisha Chowdhury , B. V. Rathish Kumar

We establish two integral variational principles for the spreading speed of the one dimensional reaction diffusion equation with Stefan boundary conditions. The first principle is valid for monostable reaction terms and the second principle…

Mathematical Physics · Physics 2023-08-10 R. D. Benguria , M. C. Depassier

We develop a kinetic theory of Brownian particles with long and short range interactions. We consider both overdamped and inertial models. In the overdamped limit, the evolution of the spatial density is governed by the generalized mean…

Statistical Mechanics · Physics 2015-05-19 Pierre-Henri Chavanis

We study steady-state thin films on a chemically heterogeneous substrates of finite size, subject to no-flux boundary conditions. Based on the structure of the bifurcation diagram, we classify the one-dimensional steady-state solutions that…

Fluid Dynamics · Physics 2021-11-16 Weifan Liu , Thomas P. Witelski

This paper develops a two-stage stochastic model to investigate evolution of random fields on the unit sphere $\bS^2$ in $\R^3$. The model is defined by a time-fractional stochastic diffusion equation on $\bS^2$ governed by a diffusion…

Probability · Mathematics 2024-03-05 T. Alodat , Q. T. Le Gia , I. H. Sloan

The effects of Poissonian resetting at a constant rate $r$ on the reaction time between a Brownian particle and a stochastically gated target are studied. The target switches between a reactive state and a non-reactive one. We calculate the…

Statistical Mechanics · Physics 2021-10-11 Gabriel Mercado-Vásquez , Denis Boyer

We study metastable behaviour in systems of weakly interacting Brownian particles with localised, attractive potentials which are smooth and globally bounded. In this particular setting, numerical evidence suggests that the particles…

Probability · Mathematics 2025-02-19 Zachary P. Adams , Maximilian Engel , Rishabh S. Gvalani

We consider the stability of position control of traveling waves in reaction-diffusion system as proposed in {[}J. L\"ober, H. Engel, arXiv:1304.2327{]}. Instead of analyzing the controlled reaction-diffusion system, stability is studied on…

Pattern Formation and Solitons · Physics 2014-06-16 Jakob Löber

We study the non-equilibrium steady states and first passage properties of a Brownian particle with position $X$ subject to an external confining potential of the form $V(X)=\mu|X|$, and that is switched on and off stochastically. Applying…

Statistical Mechanics · Physics 2020-11-11 Gabriel Mercado-Vásquez , Denis Boyer , Satya N. Majumdar , Grégory Schehr

A non-negligible part of the biological reactions in the activated sludge process for treatment of wastewater takes place in secondary settling tanks that follow biological reactors. It is therefore of interest to develop models of…

Numerical Analysis · Mathematics 2023-04-18 Raimund Bürger , Julio Careaga , Stefan Diehl , Romel Pineda

The long-time behavior of a reaction-diffusion front between one static (e.g. porous solid) reactant A and one initially separated diffusing reactant B is analyzed for the mean-field reaction-rate density R(\rho_A,\rho_B) =…

Chemical Physics · Physics 2009-10-31 Martin Z. Bazant , Howard A. Stone
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