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We study how changes in population size and fluctuating environmental conditions influence the establishment of seed banks in plants. Our model is a modification of the Wright-Fisher model with seed bank, introduced by Kaj, Krone and…

Probability · Mathematics 2026-02-05 Alison Etheridge , João Luiz de Oliveira Madeira

Most population models assume that individuals within a given population are identical, that is, the fundamental role of variation is ignored. Inhomogeneous models of populations and communities allow for birth and death rates to vary among…

Populations and Evolution · Quantitative Biology 2007-05-23 Georgy P. Karev

The evolution of two species with different fitness is investigated on degree-heterogeneous graphs. The population evolves either by one individual dying and being replaced by the offspring of a random neighbor (voter model (VM) dynamics)…

Populations and Evolution · Quantitative Biology 2009-11-13 T. Antal , S. Redner , V. Sood

We studied the effects of spatial configuration on collective dynamics in a nearest-neighbour and diffusively coupled lattice of heterogeneous nodes. The networks contained nodes from two populations, which differed in their intrinsic…

Quantitative Methods · Quantitative Biology 2022-01-20 Daniel Galvis , David J. Hodson , Kyle C. A. Wedgwood

We study a spatial predator-prey model in which prey can enter a protection zone (refuge) inaccessible to predators, while predators exhibit directed movement toward prey-rich regions. The directed movement is modeled by a far-sighted…

Analysis of PDEs · Mathematics 2026-01-23 Kousuke Kuto , Kazuhiro Oeda

Strong positive feedback is considered a necessary condition to observe abrupt shifts of ecosystems. A few previous studies have shown that demographic noise -- arising from the probabilistic and discrete nature of birth and death processes…

Populations and Evolution · Quantitative Biology 2021-06-22 Sabiha Majumder , Ayan Das , Appilineni Kushal , Sumithra Sankaran , Vishwesha Guttal

Cellular differentiation and evolution are stochastic processes that can involve multiple types (or states) of particles moving on a complex, high-dimensional state-space or "fitness" landscape. Cells of each specific type can thus be…

Populations and Evolution · Quantitative Biology 2014-11-17 Tom Chou , Yu Wang

This paper considers a two-dimensional logistic model to study populations with two genders. The growth behavior of a population is guided by two coupled ordinary differential equations given by a non-differentiable vector field whose…

Populations and Evolution · Quantitative Biology 2014-06-05 Eduardo Garibaldi , Marcelo Sobottka

We propose a new mechanism for pattern formation based on the global alternation of two dynamics neither of which exhibits patterns. When driven by either one of the separate dynamics, the system goes to a spatially homogeneous state…

Statistical Mechanics · Physics 2009-11-07 J. Buceta , Katja Lindenberg , J. M. R. Parrondo

We study a driven zero range process which models a closed system of attractive particles that hop with site-dependent rates and whose steady state shows a condensation transition with increasing density. We characterise the dynamical…

Statistical Mechanics · Physics 2009-11-10 Kavita Jain , Mustansir Barma

Stochastic models of diffusion with excluded-volume effects are used to model many biological and physical systems at a discrete level. The average properties of the population may be described by a continuum model based on partial…

Chemical Physics · Physics 2012-12-20 Maria Bruna , S. Jonathan Chapman

In many biological systems, motile agents exhibit random motion with short-term directional persistence, together with crowding effects arising from spatial exclusion. We formulate and study a class of lattice-based models for multiple…

Biological Physics · Physics 2019-11-06 Stephen Zhang , Aaron Chong , Barry D. Hughes

We consider a non-conserving zero-range process with hopping rate proportional to the number of particles at each site. Particles are added to the system with a site-dependent creation rate, and removed from the system with a uniform…

Statistical Mechanics · Physics 2019-09-04 Pascal Grange

Neutral models, in which individual agents with equal fitness undergo a birth-death-mutation process, are very popular in population genetics and community ecology. Usually these models are applied to populations and communities with…

Populations and Evolution · Quantitative Biology 2016-06-10 Matan Danino , Yahav Shem-Tov , Nadav M. Shnerb

We consider a certain lattice branching random walk with on-site competition and in an environment which is heterogeneous at a macroscopic scale $1/\varepsilon$ in space and time. This can be seen as a model for the spatial dynamics of a…

Probability · Mathematics 2024-12-24 Pascal Maillard , Gaël Raoul , Julie Tourniaire

Migration between different habitats is ubiquitous among biological populations. In this Letter, we study a simple quasispecies model for evolution in two different habitats, with different fitness landscapes, coupled through one-way…

Populations and Evolution · Quantitative Biology 2010-12-23 Bartlomiej Waclaw , Rosalind J. Allen , Martin R. Evans

This article deals with the emergence of a specific mating preference pattern called homogamy in a population. Individuals are characterized by their genotype at two haploid loci, and the population dynamics is modelled by a non-linear…

Probability · Mathematics 2019-09-25 Coron Camille , Costa Manon , Laroche Fabien , Leman Hélène , Smadi Charline

We have simulated the evolution of age structured populations whose individuals represented by their diploid genomes were distributed on a square lattice. The environmental conditions on the whole territory changed simultaneously in the…

Populations and Evolution · Quantitative Biology 2009-11-05 Wojciech Waga , Marta Zawierta , Stanislaw Cebrat

Many imaging techniques for biological systems -- like fixation of cells coupled with fluorescence microscopy -- provide sharp spatial resolution in reporting locations of individuals at a single moment in time but also destroy the dynamics…

Subcellular Processes · Quantitative Biology 2024-05-15 Christopher E. Miles , Scott A. McKinley , Fangyuan Ding , Richard B. Lehoucq

Desertification in dryland ecosystems is considered to be a major environmental threat that may lead to devastating consequences. The concern increases when the system admits two alternative steady states and the transition is abrupt and…

Populations and Evolution · Quantitative Biology 2017-09-13 Dor Herman , Nadav M. Shnerb
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