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A significant part of the proteome is composed of intrinsically-disordered proteins (IDPs). These proteins do not fold into a well-defined structure and behave like ordinary polymers. In this work we consider IDPs which have the tendency to…

Biological Physics · Physics 2018-03-14 Dino Osmanovic , Yitzhak Rabin

The 3D folding of a mammalian gene can be studied by a polymer model, where the chromatin fibre is represented by a semiflexible polymer which interacts with multivalent proteins, representing complexes of DNA-binding transcription factors…

Biological Physics · Physics 2023-12-20 Andrea Bonato , Dom Corbett , Sergey Kitaev , Davide Marenduzzo , Alexander Morozov , Enzo Orlandini

Static friction induced by moir\'e superstructure in twisted incommensurate finite layered material interfaces reveals unique double periodicity and lack of scaling with contact size. The underlying mechanism involves compensation of…

Applied Physics · Physics 2023-08-08 Weidong Yan , Xiang Gao , Wengen Ouyang , Ze Liu , Oded Hod , Michael Urbakh

The behavior of annealed branched polymers near adsorbing surfaces plays a fundamental role in many biological and industrial processes. Most importantly single stranded RNA in solution tends to fold up and self-bind to form a highly…

Soft Condensed Matter · Physics 2016-08-10 Jef Wagner , Gonca Erdemci-Tandogan , Roya Zandi

We have developed a dynamic self-consistent field theory, without any adjustable parameters, for unentangled polymer blends under shear. Our model accounts for the interaction between polymers, and enables one to compute the evolution of…

Soft Condensed Matter · Physics 2009-11-10 Tak Shing Lo , Maja Mihajlovic , Yitzhak Shnidman , Wentao Li , Dilip Gersappe

Biological organisms often have elongated, flexible structures with some degree of chirality in their bodies or movements. In nature, these organisms frequently take advantage of self-encapsulation mechanisms that create folded…

Soft Condensed Matter · Physics 2024-10-04 Lorenzo Caprini , Iman Abdoli , Umberto Marini Bettolo Marconi , Hartmut Löwen

Disclinations in a 2D sheet create regions of Gaussian curvature whose inversion produces a reconfigurable surface with many distinct metastable shapes, as shown by molecular dynamics of a disclinated graphene monolayer. This material has a…

Materials Science · Physics 2022-08-30 Benjamin N Katz , Lev Krainov , Vincent H Crespi

We have used scanning tunneling microscopy and spectroscopy to resolve the spatial variation of the density of states of twisted graphene layers on top of a highly oriented pyrolytic graphite substrate. Owing to the twist a moire pattern…

This paper is the first part in a 2 part study of an elementary functorial construction from the category of finite non-abelian groups to a category of singular compact, oriented 2-manifolds. After a desingularization process this…

Geometric Topology · Mathematics 2013-10-16 Mark Herman , Jonathan Pakianathan , Ergun Yalcin

Hypothesis: Slippery Omniphobic Covalently Attached Liquids (SOCAL) have been proposed for making omnirepellent thin films of self-assembled dimethylsiloxane polymer brushes grafted from silica surfaces. Smooth and flat at very small scale,…

Soft Condensed Matter · Physics 2023-11-21 M. Callau , C. Fajolles , J. Leroy , E. Verneuil , Patrick Guenoun

Scanning tunneling microscopy (STM) images are obtained for the first time on few layer and twisted multilayer epitaxial graphene states synthesized on n+ 6H-SiC a-plane non-polar surface. The twisted graphene is determined to have a…

Mesoscale and Nanoscale Physics · Physics 2015-06-23 P. Xu , M. L. Ackerman , S. D. Barber , J. K. Schoelz , P. M. Thibado , V. D. Wheeler , L. O. Nyakiti , R. L. Myers-Ward , C. R. Eddy , D. K. Gaskill

Mesogens, which are typically stiff rodlike or disklike molecules, are able to self-organize into liquid crystal (LC) phases in a certain temperature range. Such mesogens, or LC groups, can be attached to polymer chains in various…

Soft Condensed Matter · Physics 2023-06-21 Diego Becerra , Pranav R. Jois , Lisa M. Hall

Folded single layer graphene forms a system of two decoupled monolayers being only a few Angstroms apart. Using magnetotransport measurements we investigate the electronic properties of the two layers conducting in parallel. We show a…

Mesoscale and Nanoscale Physics · Physics 2015-05-14 H. Schmidt , T. Luedtke , P. Barthold , R. J. Haug

We present experimental results for spinodal decomposition in polymer mixtures of gelatin and dextran. The domain growth law is found to be consistent with t^1/4-growth over extended time-regimes. Similar results are obtained from lattice…

Soft Condensed Matter · Physics 2007-05-23 J. Klein Wolterink , G. T. Barkema , Sanjay Puri

We investigate the down-hill creep of a layer of granular material on a slope caused by an oscillatory variation of the size of the particles. The material is modeled as an athermal two dimensional polydisperse system of soft disks under…

Soft Condensed Matter · Physics 2022-08-31 E. A. Jagla

Twisted few-layer graphene (tFLG) has emerged as an ideal model system for investigating novel strongly correlated and topological phenomena. However, the experimental construction of tFLG with high structural stability is still…

Mesoscale and Nanoscale Physics · Physics 2025-04-29 Ruo-Jue Zou , Long Deng , Si-Min Xue , Feng-Fei Cai , Ling-Hui Tong , Yang Zhang , Yuan Tian , Li Zhang , Lijie Zhang , Zhihui Qin , Long-Jing Yin

Nanometer-thick supported lms of polymer melts spontaneously form and spread around sessile droplets that are deposited on oxidized silicon wafers. At steady state, the lms become dense and adopt a uniform thickness which is equal to twice…

Scattering symplectic manifolds are (closed) manifolds with a mildly degenerate Poisson structure. In particular they can be viewed as symplectic structures on a Lie algebroid which is almost everywhere isomorphic to the tangent bundle. In…

Symplectic Geometry · Mathematics 2018-05-15 Davide Alboresi

The results obtained from molecular dynamics simulations of the friction at an interface between polymer melts and weakly attractive crystalline surfaces are reported. We consider a coarse-grained bead-spring model of linear chains with…

Soft Condensed Matter · Physics 2012-06-12 Nikolai V. Priezjev

Suppose we have an embedding of a graph $\mathbf{G}$ created by subdividing the edges of a simpler graph $\mathbf{G'}$. The edges of $\mathbf{G}$ can be divided into subsets which join pairs of ``junction'' vertices in $\mathbf{G'}$. The…

Combinatorics · Mathematics 2024-09-30 Jason Cantarella , Henrik Schumacher , Clayton Shonkwiler