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The availability of open-source molecular simulation software packages allows scientists and engineers to focus on running and analyzing simulations without having to write, parallelize, and validate their own simulation software. While…

Computational Physics · Physics 2025-10-03 Simon Gravelle , Cecilia M. S. Alvares , Jacob R. Gissinger , Axel Kohlmeyer

We present a proposal for a versatile cold-atom-based quantum simulator of relativistic fermionic theories and topological insulators in arbitrary dimensions. The setup consists of a spin-independent optical lattice that traps a collection…

We propose a method of simulating efficiently many-body interacting fermion lattice models in trapped ions, including highly nonlinear interactions in arbitrary spatial dimensions and for arbitrarily distant couplings. We map products of…

Quantum Physics · Physics 2015-05-30 J. Casanova , A. Mezzacapo , L. Lamata , E. Solano

Large language models (LLMs) present intriguing opportunities to enhance user interaction with traditional algorithms and tools in real-world applications. An advanced planning system (APS) is a sophisticated software that leverages…

Artificial Intelligence · Computer Science 2025-07-25 Timothy Tin Long Yu , Mahdi Mostajabdaveh , Jabo Serge Byusa , Rindra Ramamonjison , Giuseppe Carenini , Kun Mao , Zirui Zhou , Yong Zhang

In this work, we have developed a multiscale computational algorithm to couple finite element method with an open source molecular dynamics code --- the Large scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) --- to perform…

Soft Condensed Matter · Physics 2019-09-17 Takahiro Murashima , Shingo Urata , Shaofan Li

We present an open-source simulation framework for optically detected magnetic resonance, developed in Python. The framework allows users to construct, manipulate, and evolve multipartite quantum systems that consist of spins and electronic…

Quantum Physics · Physics 2025-01-13 Laura A. Völker , John M. Abendroth , Christian L. Degen , Konstantin Herb

The dual fermion method is a multiscale approach for solving lattice problems of interacting strongly correlated systems. In this paper, we present the \texttt{opendf} code, an open-source implementation of the dual fermion method…

Strongly Correlated Electrons · Physics 2015-10-14 Andrey E. Antipov , James P. F. LeBlanc , Emanuel Gull

We address the question of identifying degrees of freedom for quantum systems. Typically, quasi-particle descriptions of correlated matter are based upon the canonical algebras of bosons or fermions. Here we highlight that a special class…

Strongly Correlated Electrons · Physics 2021-01-07 Eoin Quinn

We present Lyncs-API, a Python API for Lattice QCD applications currently under development. Lyncs aims to bring several widely used libraries for Lattice QCD under a common framework. Lyncs flexibly links to libraries for CPUs and GPUs in…

High Energy Physics - Lattice · Physics 2022-01-12 Simone Bacchio , Jacob Finkenrath , Christodoulos Stylianou

The Institute for Solid State Physics (ISSP) at The University of Tokyo has been carrying out a software development project named ``the Project for Advancement of Software Usability in Materials Science (PASUMS)". Since the launch of…

Software Engineering · Computer Science 2025-05-27 Kazuyoshi Yoshimi , Yuichi Motoyama , Tatsumi Aoyama , Mitsuaki Kawamura , Naoki Kawashima

Open-source software for cyber-physical systems (CPS) often lacks robust testing involving robotic platforms, resulting in critical errors that remain undetected. This is especially challenging when multiple modules of CPS software are…

Robotics · Computer Science 2026-04-14 Aditya A. Krishnan , Donghoon Kim , Hokeun Kim

LAMMPS is a widely popular classical Molecular Dynamics package. It was designed for materials modeling but it is well prepared for simulations in Soft Matter. The use packages like LAMMPS has advantages and disadvantages. The main…

Soft Condensed Matter · Physics 2021-02-25 C. S. Dias

We present the open source Astrophysical Multi-purpose Software Environment (AMUSE, www.amusecode.org), a component library for performing astrophysical simulations involving different physical domains and scales. It couples existing codes…

Instrumentation and Methods for Astrophysics · Physics 2015-06-16 F. I. Pelupessy , A. van Elteren , N. de Vries , S. L. W. McMillan , N. Drost , S. F. Portegies Zwart

Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…

NIMS-OS (NIMS Orchestration System) is a Python library created to realize a closed loop of robotic experiments and artificial intelligence (AI) without human intervention for automated materials exploration. It uses various combinations of…

Materials Science · Physics 2026-04-30 Ryo Tamura , Koji Tsuda , Shoichi Matsuda

We describe an open-source implementation of the continuous-time interaction-expansion quantum Monte Carlo method for cluster-type impurity models with onsite Coulomb interactions and complex Weiss functions. The code is based on the ALPS…

Strongly Correlated Electrons · Physics 2020-06-11 Hiroshi Shinaoka , Yusuke Nomura , Emanuel Gull

The ALP Automatic Computing Algorithm, ALPaca, is an open source Python library devoted to studying the phenomenology of Axion-Like Particles (ALPs) with masses in the ranges $m_a \in [0.01 - 10]$ GeV. ALPaca provides a flexible and…

High Energy Physics - Phenomenology · Physics 2025-08-13 Jorge Alda , Marta Fuentes Zamoro , Luca Merlo , Xavier Ponce Díaz , Stefano Rigolin

PolyMAPS is an open-source library that helps researchers to initialize LAMMPS molecular dynamics simulations. It introduces an integrated workflow by combining preparation, launching, visualization, and analysis into a single Jupyter…

Chemical Physics · Physics 2023-11-14 Xiaoli Yan , Santanu Chaudhuri

Atomistic spin dynamics simulations provide valuable information about the energy spectrum of magnetic materials in different phases, allowing one to identify instabilities and the nature of their excitations. However, the time cost of…

Computational Physics · Physics 2023-08-09 Hongwei Chen , Yujia Zhai , Joshua J. Turner , Adrian Feiguin

The combination of LLM agents with external tools enables models to solve complex tasks beyond their knowledge base. Human-designed tools are inflexible and restricted to solutions within the scope of pre-existing tools created by experts.…

Artificial Intelligence · Computer Science 2025-11-18 Mohd Ariful Haque , Justin Williams , Sunzida Siddique , Md. Hujaifa Islam , Hasmot Ali , Kishor Datta Gupta , Roy George