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A model of self-avoiding walk with suitable constraints on self-attraction is developed to describe the conformational behavior of a short RNA or a single stranded DNA molecule that forms hairpin structure and calculate the properties…

Statistical Mechanics · Physics 2007-05-23 Sanjay Kumar , Debaprasad Giri , Yashwant Singh

Using Monte-Carlo simulations, we deconvolved the sliding and hopping kinetics of GFP-LacI proteins on elongated DNA from their experimentally observed seconds-long diffusion trajectories. Our simulations suggest the following results: (1)…

Biological Physics · Physics 2015-05-20 Michael C. DeSantis , Je-Luen Li , Y. M. Wang

General properties of the hopping transport of charge carriers in amorphous organic and inorganic materials are discussed. We consider the case where the random energy landscape in the materials is strongly spatially correlated. This is a…

Materials Science · Physics 2020-02-24 S. V. Novikov

Recent measurements on ion conducting glasses have revealed that conductivity spectra for various temperatures and ionic concentrations can be superimposed onto a common master curve by an appropriate rescaling of the conductivity and…

Materials Science · Physics 2009-10-31 M. Porto , P. Maass , M. Meyer , A. Bunde , W. Dieterich

We show that the spin chain/ladder compound La_3Sr_3Ca_8Cu_24O_41 is an insulator with hopping transport along the chains. In the temperature range 35 - 280 K, DC conductivity sigma_{DC}(T) follows Mott's law of variable-range hopping…

Superconductivity · Physics 2010-10-05 T. Vuletic , B. Korin-Hamzic , S. Tomic , B. Gorshunov , P. Haas , M. Dressel , J. Akimitsu , T. Sasaki , T. Nagata

We study charge transport in an ionic solution in a confined nanoscale geometry in the presence of an externally applied electric field and immobile background charges. For a range of parameters, the ion current shows non-monotonic behavior…

Statistical Mechanics · Physics 2015-05-13 Punyabrata Pradhan , Yariv Kafri , Dov Levine

We study the transport properties of a three dimensional atomic-scale contact in the ballistic regime. The results for the conductance and related transmission eigenvalues show how the properties of the ideal semi-infinite leads (i.e.…

Disordered Systems and Neural Networks · Physics 2009-10-31 Branislav K. Nikolic , Philip B. Allen

We propose a model Hamiltonian for describing charge transport through short homogeneous double stranded DNA molecules. We show that the hybridization of the overlapping pi orbitals in the base-pair stack coupled to the backbone is…

Soft Condensed Matter · Physics 2016-08-31 G. Cuniberti , L. Craco , D. Porath , C. Dekker

The dynamics of polymer translocation through a pore has been the subject of recent theoretical and experimental works. We have considered theoretical estimates and performed computer simulations to understand the mechanism of DNA uptake…

Soft Condensed Matter · Physics 2009-11-07 Zeno Farkas , Imre Derenyi , Tamas Vicsek

The anisotropic electron transport in the (001) plane of sublimation-grown Cl$_{2}$-NDI (naphthalene diimide) single crystals is analysed over a temperature range between 175 K and 300 K. Upon cooling from room temperature to 175 K the…

We study the interplay of intrinsic-electronic and environmental factors on long-range charge transport across molecular chains with up to $N\sim 80$ monomers. We describe the molecular electronic structure of the chain with a tight-binding…

Mesoscale and Nanoscale Physics · Physics 2022-09-21 Francisco Lai Liang , Dvira Segal

We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

Materials Science · Physics 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume

Using Brownian dynamics simulations, we study the migration of long charged chains in an electrophoretic microchannel device consisting of an array of microscopic entropic traps with alternating deep regions and narrow constrictions. Such a…

Biological Physics · Physics 2007-05-23 Martin Streek , Friederike Schmid , Thanh Tu Duong , Alexandra Ros

The importance of nonlinearities in material constitutive relations has long been appreciated in the continuum mechanics of macroscopic rods. Although the moment (torque) response to bending is almost universally linear for small deflection…

Soft Condensed Matter · Physics 2009-11-10 Paul A. Wiggins , Rob Phillips , Philip C. Nelson

A dynamical model is presented for chiral change in DNA molecules. The model is an extension of the conventional elastic model which incorporates the structure of base pairs and uses a spinor representation for the DNA configuration…

Biological Physics · Physics 2011-10-06 Teruaki Okushima , Hiroshi Kuratsuji

To interpret recent experimental observations of the phononless hopping conduction, we suggest a novel transport mechanism according to which the current-carrying single electrons move via quantum resonant tunneling between localized states…

Condensed Matter · Physics 2007-05-23 S. D. Baranovskii , I. S. Shlimak

The transport characteristics of a disordered MoS$_2$ nanoflake in the insulator regime are studied by electrical and magnetotransport measurements. The layered MoS$_2$ nanoflake is exfoliated from a bulk MoS$_2$ crystal and the conductance…

Mesoscale and Nanoscale Physics · Physics 2019-06-11 Jianhong Xue , Shaoyun Huang , Ji-Yin Wang , H. Q. Xu

General discrete one-dimensional stochastic models to describe the transport of single molecules along coupled parallel lattices with period $N$ are developed. Theoretical analysis that allows to calculate explicitly the steady-state…

Soft Condensed Matter · Physics 2009-11-11 Evgeny B. Stukalin , Anatoly B. Kolomeisky

The hopping model for cargo transport by molecular motors introduced in Refs. goldman1, goldman2, is extended here in order to incorporate the movement of cargo-motor complexes. In this context, hopping process expresses the possibility for…

Subcellular Processes · Quantitative Biology 2012-01-27 Lucas W. Rossi , Carla Goldman

Most available theories for correlated electron transport are based on the Hubbard Hamiltonian. In this effective theory, renormalized hopping and interaction parameters only implicitly incorporate the coupling of correlated charge carriers…

Strongly Correlated Electrons · Physics 2014-03-20 S. Kaiser , S. R. Clark , D. Nicoletti , G. Cotugno , R. I. Tobey , N. Dean , S. Lupi , H. Okamoto , T. Hasegawa , D. Jaksch , A. Cavalleri