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The reaction-diffusion master equation (RDME) is commonly used to model processes where both the spatial and stochastic nature of chemical reactions need to be considered. We show that the RDME in many cases is inconsistent with a…

Quantitative Methods · Quantitative Biology 2009-05-29 Paul Sjoberg , Otto G Berg , Johan Elf

This paper is concerned with diffusion-reaction equations where the classical diffusion term, such as the Laplacian operator, is replaced with a singular integral term, such as the fractional Laplacian operator. As far as the reaction term…

Analysis of PDEs · Mathematics 2009-08-03 Cyril Imbert , Panagiotis E. Souganidis

The photoluminescence in amorphous semiconductors decays according to power law $t^{-delta}$ at long times. The photoluminescence is controlled by dispersive transport of electrons. The latter is usually characterized by the power $alpha$…

Statistical Mechanics · Physics 2009-11-11 Kazuhiko Seki , Mariusz Wojcik , M. Tachiya

We study the influence on diffusion in one dimension of a potential energy perturbation varying as a power in space and time. We concentrate on the case of a parabolic perturbation in space decaying as $t^{-\omega}$ which shows a rich…

Statistical Mechanics · Physics 2010-12-08 Loic Turban

Diffusion-limited reaction A+A->inert with anisotropic hopping on the d=1 lattice, is solved exactly for a simultaneous updating, discrete time-step dynamics. Diffusion-dominated processes slow down as the anisotropy increases. For large…

Condensed Matter · Physics 2014-10-13 Vladimir Privman

We study diffusion-controlled single-species annihilation with sparse initial conditions. In this random process, particles undergo Brownian motion, and when two particles meet, both disappear. We focus on sparse initial conditions where…

Statistical Mechanics · Physics 2016-11-23 E. Ben-Naim , P. L. Krapivsky

This paper is concerned with an age-structured model in population dynamics. We investigate the uniqueness of solution for this type of nonlinear reaction-diffusion problem when the source term depends on the density, indicating the…

Analysis of PDEs · Mathematics 2018-06-12 Vo Anh Khoa , Tran The Hung , Daniel Lesnic

A combination of reaction-diffusion models with moving-boundary problems yields a system in which the diffusion (spreading and penetration) and reaction (transformation) evolve the system's state and geometry over time. These systems can be…

Computational Engineering, Finance, and Science · Computer Science 2020-08-26 Mojtaba Barzegari , Liesbet Geris

Reaction-diffusion equations are one of the most common mathematical models in the natural sciences and are used to model systems that combine reactions with diffusive motion. However, rather than normal diffusion, anomalous subdiffusion is…

Statistical Mechanics · Physics 2021-04-23 Amanda M Alexander , Sean D Lawley

In this paper, we derive a new chemotaxis model with degenerate diffusion and density-dependent chemotactic sensitivity, and we provide a more realistic description of cell migration process for its early and late stages. Different from the…

Analysis of PDEs · Mathematics 2023-07-19 Tianyuan Xu , Shanming Ji , Chunhua Jin , Ming Mei , Jingxue Yin

One-dimensional reaction-diffusion models A+A -> 0, A+A -> A, and $A+B -> 0, where in the latter case like particles coagulate on encounters and move as clusters, are solved exactly with anisotropic hopping rates and assuming synchronous…

Condensed Matter · Physics 2011-10-26 Vladimir Privman , Antonio M. R. Cadilhe , M. Lawrence Glasser

We propose a simple model for reaction-diffusion systems with orientational constraints on the reactivity of particles, and map it onto a field theory with upper critical dimension d_c=2. To two-loop level the long-time particle density…

Statistical Mechanics · Physics 2009-10-31 Zoran Konkoli , Henrik Johannesson , Benjamin P. Lee

We consider general multi-species models of reaction diffusion processes and obtain a set of constraints on the rates which give rise to closed systems of equations for correlation functions. Our results are valid in any dimension and on…

Statistical Mechanics · Physics 2009-11-07 Vahid Karimipour

We studied through Monte Carlo simulations, the kinetics of the two-species diffusion-limited reaction model with same species excluded volume interaction in substrates embedded on a square lattice ranging in occupancy from a fractal…

Statistical Mechanics · Physics 2007-05-23 N. J. Goncalves , J. A. M. S. Duarte , A. Cadilhe

We consider a solvable model of the decay of scalar variance in a single-scale random velocity field. We show that if there is a separation between the flow scale k_flow^{-1} and the box size k_box^{-1}, the decay rate lambda ~…

Chaotic Dynamics · Physics 2008-11-26 A. A. Schekochihin , P. H. Haynes , S. C. Cowley

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

We study reaction-diffusion processes with multi-species of particles and hard-core interaction. We add boundary driving to the system by means of external reservoirs which inject and remove particles, thus creating stationary currents. We…

Mathematical Physics · Physics 2023-08-16 Francesco Casini , Cristian Giardina , Cecilia Vernia

Reaction-diffusion processes can be adopted to model a large number of dynamics on complex networks, such as transport processes or epidemic outbreaks. In most cases, however, they have been studied from a fermionic perspective, in which…

Statistical Mechanics · Physics 2008-10-21 Andrea Baronchelli , Michele Catanzaro , Romualdo Pastor-Satorras

We calculate the self diffusion coefficients $D_S$ for the species $s=1,2$ of a mixture, and show that a general scaling relation $D_2{\sim}D_1^a$ with a non universal exponent $a$ holds. The generalized diffusion coefficients, dependent on…

Soft Condensed Matter · Physics 2018-09-26 Neeta Bidhoodi , Shankar P. Das

The $A + B\to 0$ diffusion-limited reaction, with equal initial densities $a(0) = b(0) = n_0$, is studied by means of a field-theoretic renormalization group formulation of the problem. For dimension $d > 2$ an effective theory is derived,…

Condensed Matter · Physics 2009-10-22 Benjamin P. Lee , John Cardy