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One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

Neurons and Cognition · Quantitative Biology 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess

With the tremendous increase of the Internet traffic, achieving the best performance with limited resources is becoming an extremely urgent problem. In order to address this concern, in this paper, we build an optimization problem which…

Physics and Society · Physics 2017-02-23 Li Rui , Xia Yongxiang , Tse K Chi

Networks are ubiquitous throughout science and engineering. A number of methods, including some from our own group, have explored how one goes about computing or predicting the dynamics of networks given information about internal models of…

Molecular Networks · Quantitative Biology 2017-11-06 Gabriel A. Silva

The dynamical processes taking place on a network depend on its topology. Influencing the growth process of a network therefore has important implications on such dynamical processes. We formulate the problem of influencing the growth of a…

Social and Information Networks · Computer Science 2016-12-28 Dominik Thalmeier , Vicenç Gómez , Hilbert J. Kappen

To provide a phenomenological theory for the various interesting transitions in restructuring networks we employ a statistical mechanical approach with detailed balance satisfied for the transitions between topological states. This enables…

Statistical Mechanics · Physics 2007-05-23 Imre Derenyi , Illes Farkas , Gergely Palla , Tamas Vicsek

Network motifs are overrepresented interconnection patterns found in real-world networks. What functional advantages may they offer for building complex systems? We show that most network motifs emerge from interconnections patterns that…

Systems and Control · Computer Science 2014-11-21 Marco Tulio Angulo , Yang-Yu Liu , Jean-Jacques Slotine

Many foraging microorganisms rely upon cellular transport networks to deliver nutrients, fluid and organelles between different parts of the organism. Networked organisms ranging from filamentous fungi to slime molds demonstrate a…

Adaptation and Self-Organizing Systems · Physics 2020-12-08 Cassidy Mentus , Marcus Roper

Most real-world networks are embedded in latent geometries. If a node in a network is found in the vicinity of another node in the latent geometry, the two nodes have a disproportionately high probability of being connected by a link. The…

Physics and Society · Physics 2024-06-19 Bukyoung Jhun

A determinant property of the structure of a biological network is the distribution of local connectivity patterns, i.e., network motifs. In this work, a method for creating directed, unweighted networks while promoting a certain…

Social and Information Networks · Computer Science 2016-07-29 Tuomo Mäki-Marttunen

We propose a method of constructing a network, in which its time structure is directly incorporated, based on a deterministic model from a time series. To construct such a network, we transform a linear model containing terms with different…

Other Statistics · Statistics 2015-06-05 Tomomichi Nakamura , Toshihiro Tanizawa

Road networks are characterised by several structural and geometric properties. Their topological structure determines partially its hierarchical arrangement, but since these are networks that are spatially situated and, therefore,…

Physics and Society · Physics 2017-01-30 Carlos Molinero , Roberto Murcio , Elsa Arcaute

Creating new ties in a social network facilitates knowledge exchange and affects positional advantage. In this paper, we study the process, which we call network building, of establishing ties between two existing social networks in order…

Social and Information Networks · Computer Science 2016-05-13 Anastasia Moskvina , Jiamou Liu

Networked systems are systems of interconnected components, in which the dynamics of each component are influenced by the behavior of neighboring components. Examples of networked systems include biological networks, critical…

Systems and Control · Computer Science 2016-06-01 Andrew Clark , Basel Alomair , Linda Bushnell , Radha Poovendran

Adaptive networks appear in many biological applications. They combine topological evolution of the network with dynamics in the network nodes. Recently, the dynamics of adaptive networks has been investigated in a number of parallel…

Physics and Society · Physics 2008-01-23 Thilo Gross , Bernd Blasius

We consider recent reports on small-world topologies of interaction networks derived from the dynamics of spatially extended systems that are investigated in diverse scientific fields such as neurosciences, geophysics, or meteorology. With…

Data Analysis, Statistics and Probability · Physics 2011-05-12 Stephan Bialonski , Marie-Therese Horstmann , Klaus Lehnertz

We propose an information-based model for network dynamics in which imperfect information leads to networks where the different vertices have widely different number of edges to other vertices, and where the topology has hierarchical…

Disordered Systems and Neural Networks · Physics 2007-05-23 Martin Rosvall , Kim Sneppen

Empirical complex systems must differentially respond to external perturbations and, at the same time, internally distribute information to coordinate their components. While networked backbones help with the latter, they limit the…

Physics and Society · Physics 2025-04-18 Arsham Ghavasieh , Manlio De Domenico

Many real-world networks, ranging from subway systems to polymer structures and fungal mycelia, do not form by the incremental addition of individual nodes but instead grow through the successive extension and intersection of lines or…

Physics and Society · Physics 2026-01-14 Marc Barthelemy

Characterization of the differences between biological and random networks can reveal the design principles that enable the robust realization of crucial biological functions including the establishment of different cell types. Previous…

Molecular Networks · Quantitative Biology 2020-08-26 Shubham Tripathi , David A. Kessler , Herbert Levine

Biological networks such as gene regulatory networks possess desirable properties. They are more robust and controllable than random networks. This motivates the search for structural and dynamical features that evolution has incorporated…

Molecular Networks · Quantitative Biology 2024-02-16 Claus Kadelka , David Murrugarra