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We test four fast mean field type algorithms on Hopfield networks as an inverse Ising problem. The equilibrium behavior of Hopfield networks is simulated through Glauber dynamics. In the low temperature regime, the simulated annealing…

Disordered Systems and Neural Networks · Physics 2013-05-29 Haiping Huang

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-12-21 Madeline Navarro , Santiago Segarra

Learning to predict solutions to real-valued combinatorial graph problems promises efficient approximations. As demonstrated based on the NP-hard edge clique cover number, recurrent neural networks (RNNs) are particularly suited for this…

Machine Learning · Statistics 2019-11-20 Nil-Jana Akpinar , Bernhard Kratzwald , Stefan Feuerriegel

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

Graph processes exhibit a temporal structure determined by the sequence index and and a spatial structure determined by the graph support. To learn from graph processes, an information processing architecture must then be able to exploit…

Signal Processing · Electrical Eng. & Systems 2020-12-02 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

We find that scale-free random networks are excellently modeled by a deterministic graph. This graph has a discrete degree distribution (degree is the number of connections of a vertex) which is characterized by a power-law with exponent…

Statistical Mechanics · Physics 2009-11-07 S. N. Dorogovtsev , A. V. Goltsev , J. F. F. Mendes

Knowledge graphs have emerged to be promising datastore candidates for context augmentation during Retrieval Augmented Generation (RAG). As a result, techniques in graph representation learning have been simultaneously explored alongside…

Information Retrieval · Computer Science 2025-03-20 Md Shahir Zaoad , Niamat Zawad , Priyanka Ranade , Richard Krogman , Latifur Khan , James Holt

The brain's structural and functional systems, protein-protein interaction, and gene networks are examples of biological systems that share some features of complex networks, such as highly connected nodes, modularity, and small-world…

We present an algorithm to grow a graph with scale-free structure of {\it in-} and {\it out-links} and variable wiring diagram in the class of the world-wide Web. We then explore the graph by intentional random walks using local…

Statistical Mechanics · Physics 2009-11-10 Bosiljka Tadic

We introduce a scalable searching algorithm for finding nodes and contents in random networks with Power-Law (PL) and heavy-tailed degree distributions. The network is searched using a probabilistic broadcast algorithm, where a query…

Disordered Systems and Neural Networks · Physics 2007-05-23 Nima Sarshar , P. Oscar Boykin , Vwani P. Roychowdhury

This work examines the problem of topology inference over discrete-time nonlinear stochastic networked dynamical systems. The goal is to recover the underlying digraph linking the network agents, from observations of their state-evolution.…

Multiagent Systems · Computer Science 2019-06-24 Augusto Santos , Vincenzo Matta , Ali H. Sayed

Using probabilistic approach, the transient dynamics of sparsely connected Hopfield neural networks is studied for arbitrary degree distributions. A recursive scheme is developed to determine the time evolution of overlap parameters. As…

Disordered Systems and Neural Networks · Physics 2011-11-09 Pan Zhang , Yong Chen

We consider in this paper the problem of discovering, via a traceroute algorithm, the topology of a network, whose graph is spanned by an infinite branching process. A subset of nodes is selected according to some criterion. As a measure of…

Networking and Internet Architecture · Computer Science 2009-08-25 Fabrice Guillemin , Philippe Robert

Repeating patterns of spike sequences from a neuronal network have been proposed to be useful in the reconstruction of the network topology. Reverberations in a physiologically realistic model with various physical connection topologies…

Neurons and Cognition · Quantitative Biology 2014-07-15 Hao Song , Chun-Chung Chen , Jyh-Jang Sun , Pik-Yin Lai , C. K. Chan

A recurrent neural network (RNN) is a universal approximator of dynamical systems, whose performance often depends on sensitive hyperparameters. Tuning of such hyperparameters may be difficult and, typically, based on a trial-and-error…

Neural and Evolutionary Computing · Computer Science 2017-02-22 Filippo Maria Bianchi , Lorenzo Livi , Cesare Alippi , Robert Jenssen

The work presented in this research paper has focused on the effect of network to-pology adaptation on search performance in peer to peer overlay network. Guided search vs. blind search have been studied with the aim of improving the search…

Networking and Internet Architecture · Computer Science 2020-12-25 Muntasir Al-Asfoor , Mohammed Hamzah Abed

The "power of choice" has been shown to radically alter the behavior of a number of randomized algorithms. Here we explore the effects of choice on models of tree and network growth. In our models each new node has k randomly chosen…

Statistical Mechanics · Physics 2009-11-13 Raissa M. D'Souza , Paul L. Krapivsky , Cristopher Moore

In a graph, nodes can be characterized locally (with their degree $k$) or globally (e.g. with their average length path $\xi$ to other nodes). Here we investigate how $\xi$ depends on $k$. Our earlier algorithm of the construction of the…

Statistical Mechanics · Physics 2007-05-23 K. Malarz , K. Kulakowski

It was experimentally observed that the majority of real-world networks follow power law degree distribution. The aim of this paper is to study the algorithmic complexity of such "typical" networks. The contribution of this work is twofold.…

Data Structures and Algorithms · Computer Science 2015-07-10 Paweł Brach , Marek Cygan , Jakub Łącki , Piotr Sankowski

This work examines the problem of graph learning over a diffusion network when data can be collected from a limited portion of the network (partial observability). The main question is to establish technical guarantees of consistent…

Statistics Theory · Mathematics 2020-06-08 Vincenzo Matta , Augusto Santos , Ali H. Sayed