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The rapidly developing theory of complex networks indicates that real networks are not random, but have a highly robust large-scale architecture, governed by strict organizational principles. Here, we focus on the properties of biological…

Molecular Networks · Quantitative Biology 2007-05-23 E. Almaas , A. -L. Barabasi

In this paper we present the first mathematical analysis of the protein interaction network found in the yeast, S. cerevisiae. We show that, (a) the identified protein network display a characteristic scale-free topology that demonstrate…

Statistical Mechanics · Physics 2009-11-07 Hawoong Jeong , Sean P. Mason , Albert-Laszlo Barabasi , Zoltan N. Oltvai

Network growth is currently explained through mechanisms that rely on node prestige measures, such as degree or fitness. In many real networks those who create and connect nodes do not know the prestige values of existing nodes, but only…

Disordered Systems and Neural Networks · Physics 2007-05-23 Santo Fortunato , Alessandro Flammini , Filippo Menczer

In spite of its relevance to the origin of complex networks, the interplay between form and function and its role during network formation remains largely unexplored. While recent studies introduce dynamics by considering rewiring processes…

Physics and Society · Physics 2008-07-18 J. Poncela , J. Gomez-Gardenes , L. M. Floria , A. Sanchez , Y. Moreno

We introduce a new model of competition on growing networks. This extends the preferential attachment model, with the key property that node choices evolve simultaneously with the network. When a new node joins the network, it chooses…

Physics and Society · Physics 2016-10-05 Tonći Antunović , Elchanan Mossel , Miklos Z. Racz

In this paper we investigate networks whose evolution is governed by the interaction of a random assembly process and an optimization process. In the first process, new nodes are added one at a time and form connections to randomly selected…

Disordered Systems and Neural Networks · Physics 2011-05-16 Markus Brede

There are diverse mechanisms driving the evolution of social networks. A key open question dealing with understanding their evolution is: How various preferential linking mechanisms produce networks with different features? In this paper we…

Physics and Society · Physics 2015-06-12 Haibo Hu , Jinli Guo , Xuan Liu

Scale-free and non-computable characteristics of natural networks are found to result from the least-time dispersal of energy. To consider a network as a thermodynamic system is motivated since ultimately everything that exists can be…

General Physics · Physics 2011-06-22 Tuomo Hartonen , Arto Annila

Preferential attachment is one possible way to obtain a scale-free network. We develop a self-consistent method to determine whether preferential attachment occurs during the growth of a network, and to extract the preferential attachment…

Statistical Mechanics · Physics 2007-05-23 Claire P. Massen , Jonathan P. K. Doye

Many complex systems--from social and communication networks to biological networks and the Internet--are thought to exhibit scale-free structure. However, prevailing explanations rely on the constant addition of new nodes, an assumption…

Adaptation and Self-Organizing Systems · Physics 2022-11-10 Christopher W. Lynn , Caroline M. Holmes , Stephanie E. Palmer

In this article we presented a brief study of the main network models with growth and preferential attachment. Such models are interesting because they present several characteristics of real systems. We started with the classical model…

Physics and Society · Physics 2020-07-06 Gabriel G. Piva , Fabiano L. Ribeiro , Angelica S. Mata

In recent years, the theory and application of complex networks have been quickly developing in a markable way due to the increasing amount of data from real systems and to the fruitful application of powerful methods used in statistical…

Physics and Society · Physics 2014-05-23 Enys Mones

Simple growth mechanisms have been proposed to explain the emergence of seemingly universal network structures. The widely-studied model of preferential attachment assumes that new nodes are more likely to connect to highly connected nodes.…

Physics and Society · Physics 2016-03-09 Chung Yin Leung , Joshua S. Weitz

We generalize the scale-free network model of Barab\`asi and Albert [Science 286, 509 (1999)] by proposing a class of stochastic models for scale-free interdependent networks in which interdependent nodes are not randomly connected but…

Physics and Society · Physics 2015-06-11 Boris Podobnik , Davor Horvatic , Mark Dickison , H. Eugene Stanley

Many growing networks possess accelerating statistics where the number of links added with each new node is an increasing function of network size so the total number of links increases faster than linearly with network size. In particular,…

Molecular Networks · Quantitative Biology 2017-12-22 M. J. Gagen , J. S. Mattick

In the context of growing networks, we introduce a simple dynamical model that unifies the generic features of real networks: scale-free distribution of degree and the small world effect. While the average shortest path length increases…

Condensed Matter · Physics 2009-11-07 Konstantin Klemm , Victor M. Eguiluz

This paper expands the degree-based consideration of the preferential attachment growth process and applies five different connectivity criteria (node degree, clustering coefficient, betweenness centrality, closeness centrality, and…

Physics and Society · Physics 2020-01-16 Dimitrios Tsiotas

Two processes can influence the evolution of protein interaction networks: addition and elimination of interactions between proteins, and gene duplications increasing the number of proteins and interactions. The rates of these processes can…

Statistical Mechanics · Physics 2007-05-23 A. Wagner

Growing synthetic networks that follow power law distributions of a node's degree often involves adding one node at a time. Each node is added to the network with a fixed amount of edges and those edges are frozen for all future time steps.…

Physics and Society · Physics 2026-01-27 Justin Downes

It has recently been discovered that many biological systems, when represented as graphs, exhibit a scale-free topology. One such system is the set of structural relationships among protein domains. The scale-free nature of this and other…

Populations and Evolution · Quantitative Biology 2009-11-10 Eric J. Deeds , Eugene I. Shakhnovich