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We describe a graphical model for probabilistic relationships---an alternative to the Bayesian network---called a dependency network. The graph of a dependency network, unlike a Bayesian network, is potentially cyclic. The probability…

Artificial Intelligence · Computer Science 2013-01-18 David Heckerman , David Maxwell Chickering , Christopher Meek , Robert Rounthwaite , Carl Kadie

Since Darwin, species trees have been used as a simplified description of the relationships which summarize the complicated network $N$ of reality. Recent evidence of hybridization and lateral gene transfer, however, suggest that there are…

Populations and Evolution · Quantitative Biology 2016-11-17 Stephen J. Willson

A random network model which allows for tunable, quite general forms of clustering, degree correlation and degree distribution is defined. The model is an extension of the configuration model, in which stubs (half-edges) are paired to form…

Probability · Mathematics 2012-07-31 Frank Ball , Tom Britton , David Sirl

In the task of information retrieval the term relevance is taken to mean formal conformity of a document given by the retrieval system to user's information query. As a rule, the documents found by the retrieval system should be submitted…

Computation and Language · Computer Science 2007-10-02 S. Braichevsky , D. Lande , A. Snarskii

Empirical studies of graphs have contributed enormously to our understanding of complex systems. Known today as network science, what was originally a theoretical study of graphs has grown into a more scientific exploration of communities…

Quantitative Methods · Quantitative Biology 2020-01-01 Ryan E. Langendorf , Debra S. Goldberg

We introduce a generalized notion of inference system to support more flexible interpretations of recursive definitions. Besides axioms and inference rules with the usual meaning, we allow also coaxioms, which are, intuitively, axioms which…

Logic in Computer Science · Computer Science 2023-06-22 Francesco Dagnino

Networks represent relationships between entities in many complex systems, spanning from online social interactions to biological cell development and brain connectivity. In many cases, relationships between entities are unambiguously…

Social and Information Networks · Computer Science 2018-01-23 Ivan Brugere , Brian Gallagher , Tanya Y. Berger-Wolf

Recently, the abundance of digital data enabled the implementation of graph based ranking algorithms that provide system level analysis for ranking publications and authors. Here we take advantage of the entire Physical Review publication…

Physics and Society · Physics 2009-11-11 Filippo Radicchi , Santo Fortunato , Benjamin Markines , Alessandro Vespignani

This paper is devoted to the extraction of entities and semantic relations between them from scientific texts, where we consider scientific terms as entities. In this paper, we present a dataset that includes annotations for two tasks and…

Computation and Language · Computer Science 2022-09-30 Elena Bruches , Olga Tikhobaeva , Yana Dementyeva , Tatiana Batura

In this paper we present the application of a novel methodology to scientific citation and collaboration networks. This methodology is designed for understanding the governing dynamics of evolving networks and relies on an attachment…

Disordered Systems and Neural Networks · Physics 2009-09-29 Gabor Csardi , Katherine Strandburg , Laszlo Zalanyi , Jan Tobochnik , Peter Erdi

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Networks built to model real world phenomena are characeterised by some properties that have attracted the attention of the scientific community: (i) they are organised according to community structure and (ii) their structure evolves with…

Social and Information Networks · Computer Science 2019-09-04 Giulio Rossetti , Rémy Cazabet

The Data Web refers to the vast and rapidly increasing quantity of scientific, corporate, government and crowd-sourced data published in the form of Linked Open Data, which encourages the uniform representation of heterogeneous data items…

Vast amounts of human communication occurs online. These digital traces of natural human communication along with recent advances in natural language processing technology provide for computational analysis of these discussions. In the…

Social and Information Networks · Computer Science 2023-04-10 Nicholas Botzer , Tim Weninger

In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…

Combinatorics · Mathematics 2018-01-04 Yangjing Long

Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

Networks are a fundamental tool for understanding and modeling complex systems in physics, biology, neuroscience, engineering, and social science. Many networks are known to exhibit rich, lower-order connectivity patterns that can be…

Social and Information Networks · Computer Science 2018-01-08 Austin R. Benson , David F. Gleich , Jure Leskovec

In many real world networks, the number of links increases nonlinearly with the number of nodes. Models of such accelerated growth have been considered earlier with deterministic and stochastic number of links. Here we consider stochastic…

Statistical Mechanics · Physics 2009-11-10 Parongama Sen

The aggregated journal-journal citation matrix derived from the Journal Citation Reports 2001 can be decomposed into a unique subject classification by using the graph-analytical algorithm of bi-connected components. This technique was…

Digital Libraries · Computer Science 2009-12-08 Loet Leydesdorff

Two classical concepts of centrality in a graph are the median and the center. The connected notions of the status and the radius of a graph seem to be in no relation. In this paper, however, we show a clear connection of both concepts, as…

Combinatorics · Mathematics 2014-07-17 Roswitha Rissner , Rainer E. Burkard
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