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Related papers: Attraction between DNA molecules mediated by multi…

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We studied the electrical conductivity of DNA molecules with conducting atomic force microscopy as a function of the chemical nature of the substrate surfaces, the nature of the electrical contact, and the number of DNA molecules (from a…

Materials Science · Physics 2009-11-10 Thomas Heim , Dominique Deresmes , Dominique Vuillaume

Strong short ranged positional correlations involving counterions can induce a net attractive force between negatively charged strands of DNA, and lead to the formation of ion pairs in dilute ionic solutions. But the long range of the…

Statistical Mechanics · Physics 2009-11-11 Yng-Gwei Chen , John D. Weeks

We predict streaming current inversion with multivalent counterions in hydrodynamically driven polymer translocation events from a correlation-corrected charge transport theory including charge fluctuations around mean-field electrostatics.…

Soft Condensed Matter · Physics 2015-03-05 Sahin Buyukdagli , Ralf Blossey , T. Ala-Nissila

Polyelectrolytes are commonly used to chelate multi-valent ions in aqueous solutions, playing a critical role in water softening and the prevention of mineralization. At sufficient ionic strength, ion-mediated…

Soft Condensed Matter · Physics 2023-11-21 Alec Glisman , Sriteja Mantha , Decai Yu , Eric Wasserman , Scott Backer , Zhen-Gang Wang

The classical Gibbs-Donnan equilibrium describes excess osmotic pressure associated with confined colloidal charges embedded in an electrolyte solution. In this work, we extend this approach to describe the influence of multivalent ion…

Biological Physics · Physics 2007-05-23 Martin Castelnovo , Alex Evilevitch

A theory of condensation and resolubilization of a dilute DNA solution with growing concentration of multivalent cations, N is suggested. It is based on a new theory of screening of a macroion by multivalent cations, which shows that due to…

Soft Condensed Matter · Physics 2009-10-31 T. T. Nguyen , I. Rouzina , B. I. Shklovskii

We study the role of cations on the stability of double stranded DNA (dsDNA) molecules.It is known that the two strands of double stranded DNA(dsDNA) have negative charge due to phosphate group. Cations in the form of salt in the solution,…

Soft Condensed Matter · Physics 2015-09-29 Amar Singh , Navin Singh

When pulled along the axis, double-strand DNA undergoes a large conformational change and elongates roughly twice its initial contour length at a pulling force about 70 pN. The transition to this highly overstretched form of DNA is very…

Soft Condensed Matter · Physics 2008-09-11 Mogurampelly Santosh , Prabal K Maiti

We have directly observed reversal of the polarity of charged surfaces in water upon the addition of tri- and quadrivalent ions using atomic force microscopy. The bulk concentration of multivalent ions at which charge inversion reversibly…

Statistical Mechanics · Physics 2009-11-10 K. Besteman , M. A. G. Zevenbergen , H. A. Heering , S. G. Lemay

The structure of DNA double helix is stabilized by metal counterions condensed to a diffuse layer around the macromolecule. The dynamics of counterions in real conditions is governed by the electric fields from DNA and other biological…

Biological Physics · Physics 2020-10-27 O. O. Zdorevskyi , S. M. Perepelytsya

We address theoretically aggregation of DNA segments by multivalent polyamines such as spermine and spermidine. In experiments, the aggregation occurs above a certain threshold concentration of multivalent ions. We demonstrate that the…

Soft Condensed Matter · Physics 2009-11-10 Y. Burak , G. Ariel , D. Andelman

Soft matter materials, such as polymers, membranes, proteins, are often electrically charged. This makes them water soluble, which is of great importance in technological application and a prerequisite for biological function. We discuss a…

Soft Condensed Matter · Physics 2007-05-23 H. Boroudjerdi , Y. -W. Kim , A. Naji , R. R. Netz , X. Schlagberger , A. Serr

A study of a model rod-like polyelectrolyte molecule immersed into a monovalent or divalent electrolyte is presented. Results from the hypernetted-chain/mean spherical approximation (HNC/MSA) theory, for inhomogeneous charged fluids, {\ch…

Soft Condensed Matter · Physics 2007-05-23 Markus Deserno , Felipe Jimenez-Angeles , Christian Holm , Marcelo Lozada-Cassou

We construct a theoretical model for the dynamics of a microscale colloidal particle, modeled as an interval, moving horizontally on a DNA-coated surface, modelled as a line coated with springs that can stick to the interval. Averaging over…

Soft Condensed Matter · Physics 2018-09-28 James P. Lee-Thorp , Miranda Holmes-Cerfon

Upon the addition of multivalent cations, a giant DNA chain exhibits a large discrete transition from an elongated coil into a folded compact state. We performed single-chain observation of long DNAs in the presence of a tetravalent cation…

Soft Condensed Matter · Physics 2009-11-10 Takuya Saito , Takafumi Iwaki , Kenichi Yoshikawa

There are many proteins or protein complexes which have multiple DNA binding domains. This allows them to bind to multiple points on a DNA molecule (or chromatin fibre) at the same time. There are also many proteins which have been found to…

Soft Condensed Matter · Physics 2020-06-24 C. A. Brackley

The formation of complexes between like-charged polyelectrolytes challenges conventional electrostatic intuition and highlights the central role of ions in mediating macromolecular organization. Here, we investigate the salt-dependent…

Soft Condensed Matter · Physics 2026-01-29 Sisem Ektirici , Vagelis Harmandaris , Christos N. Likos , Terpsichori S. Alexiou

We report new attractive force between ions that are shielded by degenerate electrons in quantum plasmas. Specifically, we show that the electric potential around an isolated ion has a hard core negative part that resembles the…

Plasma Physics · Physics 2012-08-13 Padma Kant Shukla , Bengt Eliasson

Interfacial polar molecules feature a strongly anisotropic response to applied electric field, favoring dipole orientations parallel to the interface. In water, in particular, this effect combines with generic orientational preferences…

Soft Condensed Matter · Physics 2017-02-08 Dusan Bratko , Christopher D. Daub , Alenka Luzar

We examine the effective force between two nanometer scale solutes in water by Molecular Dynamics simulations. Macroscopic considerations predict a strong reduction of the hydrophobic attraction between solutes when the latter are charged.…

Statistical Mechanics · Physics 2009-11-10 J. Dzubiella , J. -P. Hansen