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We study networks constructed from gene expression data obtained from many types of cancers. The networks are constructed by connecting vertices that belong to each others' list of K-nearest-neighbors, with K being an a priori selected…

Soft Condensed Matter · Physics 2009-11-07 Himanshu Agrawal

Several networks occurring in real life have modular structures that are arranged in an hierarchical fashion. In this paper, we have proposed a model for such networks, using a stochastic generation method. Using this model we show that,…

Physics and Society · Physics 2009-03-12 Raj Kumar Pan , Sitabhra Sinha

Spatially constrained planar networks are frequently encountered in real-life systems. In this paper, based on a space-filling disk packing we propose a minimal model for spatial maximal planar networks, which is similar to but different…

Statistical Mechanics · Physics 2009-08-05 Zhongzhi Zhang , Jihong Guan , Bailu Ding , Lichao Chen , Shuigeng Zhou

A recent paper "Emergence of scaling in random networks" (cond-mat/9910332) by Barabasi and Albert proposes a growth mechanism to produce a stationary scale free distribution of the number of edges per node in large networks such as the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Lada A. Adamic , Bernardo A. Huberman

We propose a simple model that aims at describing, in a stylized manner, how local breakdowns due unbalances or congestion propagate in real dynamical networks. The model converges to a self-organized critical stationary state in which the…

Statistical Mechanics · Physics 2007-05-23 Ginestra Bianconi , Matteo Marsili

Many networks of interest in the sciences, including a variety of social and biological networks, are found to divide naturally into communities or modules. The problem of detecting and characterizing this community structure has attracted…

Data Analysis, Statistics and Probability · Physics 2007-05-23 M. E. J. Newman

We show that to explain the growth of the citation network by preferential attachment (PA), one has to accept that individual nodes exhibit heterogeneous fitness values that decay with time. While previous PA-based models assumed either…

Physics and Society · Physics 2011-12-05 Matus Medo , Giulio Cimini , Stanislao Gualdi

The learned weights of a neural network are often considered devoid of scrutable internal structure. To discern structure in these weights, we introduce a measurable notion of modularity for multi-layer perceptrons (MLPs), and investigate…

Neural and Evolutionary Computing · Computer Science 2022-02-09 Daniel Filan , Shlomi Hod , Cody Wild , Andrew Critch , Stuart Russell

This research establishes that many real-world networks exhibit bounded expansion, a strong notion of structural sparsity, and demonstrates that it can be leveraged to design efficient algorithms for network analysis. We analyze several…

Social and Information Networks · Computer Science 2018-10-15 Erik D. Demaine , Felix Reidl , Peter Rossmanith , Fernando Sanchez Villaamil , Somnath Sikdar , Blair D. Sullivan

We examine the global organization of heterogeneous equilibrium networks consisting of a number of well distinguished interconnected parts--``communities'' or modules. We develop an analytical approach allowing us to obtain the statistics…

Statistical Mechanics · Physics 2009-11-13 S. N. Dorogovtsev , J. F. F. Mendes , A. N. Samukhin , A. Y. Zyuzin

In this paper, we propose a self-learning mutual selection model to characterize weighted evolving networks. By introducing the self-learning probability $p$ and the general mutual selection mechanism, which is controlled by the parameter…

The presence of hierarchy in many real-world networks is not yet fully explained. Complex interaction networks are often coarse-grain models of vast modular networks, where tightly connected subgraphs are agglomerated into nodes for…

Physics and Society · Physics 2021-02-24 C. Tyler Diggans , Jeremie Fish , Erik Bollt

This study proposes a novel network growth model named ComAwareNetGrowth which aims to mimic evolution of real-world social networks. The model works in discrete time. At each timestep, a new link (I) within-community or (II) anywhere in…

Social and Information Networks · Computer Science 2019-01-16 Furkan Gursoy , Bertan Badur

Graph theoretical analysis of the community structure of networks attempts to identify the communities (or modules) to which each node affiliates. However, this is in most cases an ill-posed problem, as the affiliation of a node to a single…

A computer model is described which is used to assess the dynamical complexity of a class of networks of spiking neurons with small-world properties. Networks are constructed by forming an initially segregated set of highly intra-connected…

Biological Physics · Physics 2009-11-13 Murray Shanahan

We propose a scale-free network model with a tunable power-law exponent. The Poisson growth model, as we call it, is an offshoot of the celebrated model of Barab\'{a}si and Albert where a network is generated iteratively from a small seed…

Applications · Statistics 2013-12-24 Paul Sheridan , Yuichi Yagahara , Hidetoshi Shimodaira

Based on the concept and techniques of first-passage probability in Markov chain theory, this letter provides a rigorous proof for the existence of the steady-state degree distribution of the scale-free network generated by the…

Probability · Mathematics 2008-05-13 Zhenting Hou , Xiangxing Kong , Dinghua Shi , Guanrong Chen

In this work we present a general mechanism by which simple dynamics running on networks become self-organized critical for scale free topologies. We illustrate this mechanism with a simple arithmetic model of division between integers, the…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 Bartolo Luque , Octavio Miramontes , Lucas Lacasa

We obtain the degree distribution for a class of growing network models on flat and curved spaces. These models evolve by preferential attachment weighted by a function of the distance between nodes. The degree distribution of these models…

Disordered Systems and Neural Networks · Physics 2013-05-29 Luca Ferretti , Michele Cortelezzi

Learning latent structure in complex networks has become an important problem fueled by many types of networked data originating from practically all fields of science. In this paper, we propose a new non-parametric Bayesian…

Social and Information Networks · Computer Science 2015-03-18 Morten Mørup , Mikkel N. Schmidt , Lars Kai Hansen