Related papers: Invariant grids for reaction kinetics
MGARD (MultiGrid Adaptive Reduction of Data) is an algorithm for compressing and refactoring scientific data, based on the theory of multigrid methods. The core algorithm is built around stable multilevel decompositions of conforming…
Changes in hydration are central to the phenomenon of biomolecular recognition, but it has been difficult to properly frame and answer questions about their precise thermodynamic role. We address this problem by introducing Grid…
We present an efficient numerical method, inspired by transformation optics, for solving the Poisson equation in complex and arbitrarily shaped geometries. The approach operates by mapping the physical domain to a uniform computational…
Obtaining consistent explanations for machine learning on molecular graphs requires predictions and attributions to be aligned with chemical identity. However, chemically equivalent drawings of the same molecule can induce different…
Traditional feature matching methods such as scale-invariant feature transform (SIFT) usually use image intensity or gradient information to detect and describe feature points; however, both intensity and gradient are sensitive to nonlinear…
At the heart of Newton based optimization methods is a sequence of symmetric linear systems. Each consecutive system in this sequence is similar to the next, so solving them separately is a waste of computational effort. Here we describe…
Discrete Empirical Interpolation Method (DEIM) is a simple and effective method for reconstructing a function from its incomplete pointwise observations. However, applying DEIM to functions with physically constrained ranges can produce…
This paper proposes the method to optimize restriction and prolongation operators in the two-grid method. The proposed method is straightforwardly extended to the geometric multigrid method (GMM). GMM is used in solving discretized partial…
A numerical algorithm for solving mantle convection problems with strongly variable viscosity is presented. Equations for conservation of mass and momentum for highly viscous and incompressible fluids are solved iteratively by a multigrid…
The multiplicative Newton-like method developed by the author et al. is extended to the situation where the dynamics is restricted to the orthogonal group. A general framework is constructed without specifying the cost function. Though the…
We demonstrate that the finite difference grid method (FDM) can be simply modified to satisfy the variational principle and enable calculations of both real and complex poles of the scattering matrix. These complex poles are known as…
This letter develops a novel physics-informed neural ordinary differential equations-based framework to emulate the proprietary dynamics of the inverters -- essential for improved accuracy in grid dynamic simulations. In current industry…
We introduce a dilated coordinate method to address computational challenges in nuclear lattice effective field theory (NLEFT) for weakly-bound few-body systems. The approach employs adaptive mesh refinement via analytic coordinate…
The general inverse kinematics (IK) problem of a manipulator, namely that of acquiring the self-motion manifold (SMM) of all admissible joint angles for a desired end-effector pose, plays a vital role in robotics modeling, planning and…
This paper proposes a mode multigrid (MMG) method, and applies it to accelerate the convergence of the steady state flow on unstructured grids. The dynamic mode decomposition (DMD) technique is used to analyze the convergence process of…
A high-order Newton multigrid method is proposed for steady-state shallow water flows in open channels with regular and irregular geometries. The method integrates a finite volume discretization with third-order weighted essentially…
I prove that a centre manifold approach to creating finite difference models will consistently model linear dynamics as the grid spacing becomes small. Using such tools of dynamical systems theory gives new assurances about the quality of…
Physics-informed neural networks (PINNs) have effectively been demonstrated in solving forward and inverse differential equation problems, but they are still trapped in training failures when the target functions to be approximated exhibit…
A novel compute intensification methodology to the construction of low-dimensional, high-fidelity "compact" kinetic models for NOX formation is designed and demonstrated. The method adapts the data intensive Machine Learned Optimization of…
In this paper, we present an efficient adaptive multigrid strategy for the geometry optimization of large-scale three dimensional molecular mechanics. The resulting method can achieve significantly reduced complexity by exploiting the…