English
Related papers

Related papers: Phase field approach for modeling intracellular dy…

200 papers

We propose and study a simple, physical model for phagocytosis, i.e. the active, actin-mediated uptake of micron-sized particles by biological cells. The cell is described by the phase field method and the driving mechanisms of uptake are…

Soft Condensed Matter · Physics 2023-10-13 Benjamin Winkler , Mohammad Abu Hamed , Alexander A. Nepomnyashchy , Falko Ziebert

We study the dynamical evolution of a system with a phase space consisting of configurations with random energies. The dynamics we use is of Glauber type. It allows for some dynamical evolution ang aging even at very low temperatures,…

Condensed Matter · Physics 2009-10-28 A. Barrat , M. Mézard

The possibility to apply phase-space methods to many-body interacting systems might provide accurate descriptions of correlations with a reduced numerical cost. For instance, the so--called stochastic mean-field phase-space approach, where…

Nuclear Theory · Physics 2020-04-22 Thomas Czuba , Denis Lacroix , David Regnier , Ibrahim Ulgen , Bulent Yilmaz

We study a diffusion model of phase field type, which consists of a system of two partial differential equations involving as variables the thermal displacement, that is basically the time integration of temperature, and the order…

Analysis of PDEs · Mathematics 2011-08-29 Giacomo Canevari , Pierluigi Colli

Phase field crystals (PFC) are a tool for simulating materials at the atomic level. They combine the small length-scale resolution of molecular dynamics (MD) with the ability to simulate dynamics on mesoscopic time scales. We show how PFC…

Materials Science · Physics 2015-05-13 P. F. Tupper , Martin Grant

Diffusion is a fundamental phenomenon that occurs ubiquitously in nature and remains the subject of continuous research interest. Understanding diffusion is a key to understanding leaving systems. In this Chapter, I discuss diffusion of…

Soft Condensed Matter · Physics 2018-10-15 Svyatoslav Kondrat

The dynamics of solid-liquid interfaces controlled by solute precipitation and/or dissolution due to the chemical reaction at the interface were computed in two dimensions using a phase field models. Sharp-interface asymptotic analysis…

Computational Physics · Physics 2018-08-30 Zhijie Xu , Hai Huang , Xiaoyi Li , Paul Meakin

A phase-field approach describing the dynamics of a strained solid in contact with its melt is developed. By rigorous asymptotic analysis we show that the sharp-interface limit of this model recovers the continuum model equations for the…

Statistical Mechanics · Physics 2007-05-23 Klaus Kassner , Chaouqi Misbah , Judith Mueller , Jens Kappey , Peter Kohlert

We develop a method for modeling and simulating a class of two-phase flows consisting of two immiscible incompressible dielectric fluids and their interactions with imposed external electric fields in two and three dimensions. We first…

Numerical Analysis · Mathematics 2024-07-08 Jielin Yang , Ivan C. Christov , Suchuan Dong

This paper surveys recent numerical advances in the phase field method for geometric surface evolution and related geometric nonlinear partial differential equations (PDEs). Instead of describing technical details of various numerical…

Numerical Analysis · Mathematics 2019-04-24 Qiang Du , Xiaobing Feng

Multiphase field models have emerged as an important computational tool for understanding biological tissue while resolving single-cell properties. While they have successfully reproduced many experimentally observed behaviors of living…

Soft Condensed Matter · Physics 2025-02-13 Michael Chiang , Austin Hopkins , Benjamin Loewe , Davide Marenduzzo , M. Cristina Marchetti

Fracture is a fundamental mechanism of materials failure. Propagating cracks can exhibit a rich dynamical behavior controlled by a subtle interplay between microscopic failure processes in the crack tip region and macroscopic elasticity. We…

Materials Science · Physics 2015-05-18 R. Spatschek , E. Brener , A. Karma

We propose a model describing the liquid-vapour phase transition according to a phase-field approach. The model takes up a setting proposed by the second author, where a phase field is introduced whose equilibrium values 0 and 1 are…

Mathematical Physics · Physics 2010-12-14 V. Berti , M. Fabrizio , D. Grandi

Many physical systems of interest involve the close interaction of a flow in a domain with complex, time-varying boundaries. Treatment of boundaries of this nature is cumbersome due to the difficulty in explicitly tracking boundaries that…

Fluid Dynamics · Physics 2025-02-25 Emma M. Boyd , Eric Sandall , Maycon Meier , J. Matt Quinlan , Brandon Runnels

Particle-stabilised emulsions are a cornerstone of soft matter science due to their broad application and fundamental relevance. Computer simulations provide key insights into the formation and behaviour of these emulsions, yet current…

Soft Condensed Matter · Physics 2026-02-19 Elisabeth C. Eij , Joost de Graaf , Martin F. Haase , Jesse M. Steenhoff

In this work we propose an approach to deal with radiation field states which incorporates damping effects at zero temperature. By using some well known results on dissipation of a cavity field state, obtained by standard ab-initio methods,…

Quantum Physics · Physics 2009-11-06 N. G. de Almeida , P. B. Ramos , R. M. Serra , M. H. Y. Moussa

Since its foundations, more than one hundred years ago, the field of structural biology has strived to understand and analyze the properties of molecules and their interactions by studying the structure that they take in 3D space. However,…

Biomolecules · Quantitative Biology 2023-02-27 Gabriele Corso

This paper proposes a new strategy to implement the free-energy based wetting boundary condition within the phase-field lattice Boltzmann method. The greatest advantage of the proposed method is that the implementation of contact line…

Mathematical Physics · Physics 2023-12-04 Long Ju , Zhaoli Guo , Bicheng Yan , Shuyu Sun

Modeling microstructure evolution in electrochemical systems is vital for understanding the mechanism of various electrochemical processes. In this work, we propose a general phase field framework that is fully variational and thus…

Materials Science · Physics 2023-12-12 Jin Zhang , Alexander F. Chadwick , Peter W. Voorhees

The particle-in-cell (PIC) method has been widely used for plasma simulation, because of its noise-reduction capability and moderate computational cost. The immersed finite element (IFE) method is efficient for solving interface problems on…

Numerical Analysis · Mathematics 2019-10-18 Jinwei Bai , Yong Cao , Yuchuan Chu , Xu Zhang