Related papers: Knot Probability for Self-Avoiding Loops on a Cubi…
In a previous work, the first and third authors studied a random knot model for all two-bridge knots using billiard table diagrams. Here we present a closed formula for the distribution of the crossing numbers of such random knots. We also…
A self-avoiding walk (SAW) on the square lattice is prudent if it never takes a step towards a vertex it has already visited. Prudent walks differ from most classes of SAW that have been counted so far in that they can wind around their…
Advanced Monte Carlo simulations are used to study the effect of nano-slit confinement on metric and topological properties of model DNA chains. We consider both linear and circularised chains with contour lengths in the 1.2--4.8 $\mu$m…
Random sequential adsorption of binary mixtures of extended objects on a two-dimensional triangular lattice is studied numerically by means of Monte Carlo simulations. The depositing objects are formed by self-avoiding random walks on the…
We show that the subgroup of the knot concordance group generated by links of isolated complex singularities intersects the subgroup of algebraically slice knots in an infinite rank subgroup.
In this paper, we study the dynamics of a random walker diffusing on a disordered one-dimensional lattice with random trappings. The distribution of escape probabilities is computed exactly for any strength of the disorder. These…
The study of the effect of random impurities on the collapse of a flexible polymer in dilute solution has had recent attention with consideration of semi-stiff interacting self-avoiding walks on the square lattice. In the absence of…
We construct a tractable model to describe the rate at which a knotted polymer is ejected from a spherical capsid via a small pore. Knots are too large to fit through the pore and must reptate to the end of the polymer for ejection to…
Kinetically-grown self-avoiding walks have been studied on Watts-Strogatz small-world networks, rewired from a two-dimensional square lattice. The maximum length L of this kind of walks is limited in regular lattices by an attrition effect,…
We have studied a model of self-attracting walk proposed by Sapozhnikov using Monte Carlo method. The mean square displacement $ < R^2(t) > \sim t^{2\nu}$ and the mean number of visited sites $ < S(t) > \sim t^{k}$ are calculated for one-,…
We study the splitting of regular square lattices subject to stochastic intermittent flows. Various flow patterns are produced by different groupings of the nodes, based on their random alternation between two possible states. The resulting…
Exact results are obtained for random walks on finite lattice tubes with a single source and absorbing lattice sites at the ends. Explicit formulae are derived for the absorption probabilities at the ends and for the expectations that a…
We develop off-lattice simulations of semiflexible polymer chains subjected to applied mechanical forces using Markov Chain Monte Carlo. Our approach models the polymer as a chain of fixed-length bonds, with configurations updated through…
In the loop $O(n)$ model a collection of mutually-disjoint self-avoiding loops is drawn at random on a finite domain of a lattice with probability proportional to $${\lambda^{\# \mbox{edges}} n^{\# \mbox{loops}},}$$ where $\lambda, n \in…
We use the recently conjectured exact $S$-matrix of the massive ${\rm O}(n)$ model to derive its form factors and ground state energy. This information is then used in the limit $n\to0$ to obtain quantitative results for various universal…
Bridging algorithms are global Monte Carlo moves which allow for an efficient sampling of single polymer chains. In this manuscript we discuss the adaptation of three bridging algorithms from lattice to continuum models, and give details on…
Semiflexible polymer models are widely used as a paradigm to understand structural phases in biomolecules including folding of proteins. Since stable knots are not so common in real proteins, the existence of stable knots in semiflexible…
Self-avoiding walks are studied on the 3-simplex fractal lattice as a model of linear polymer conformations in a dilute, non-homogeneous solution. A model is supplemented with bending energies and attractive-interaction energies between…
We discuss the physical picture of thick vortices as the mechanism responsible for confinement at arbitrarily weak coupling in SU(2) gauge theory. By introducing appropriate variables on the lattice we distinguish between thin, thick and…
Knots have been considered to be useful models for simulating molecular chains such as DNA and proteins. One quantity that we are interested on molecular knots is the minimum number of monomers necessary to realize a knot. In this paper we…