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Nucleation of a new phase almost always starts at a surface. This surface is almost always assumed not to change with time. However, surfaces can roughen, partially dissolve and change chemically with time. Each of these irreversible…

Soft Condensed Matter · Physics 2015-03-25 Richard P. Sear

Integral membrane proteins deform the surrounding bilayer creating long-ranged forces that influence distant proteins. These forces can be attractive or repulsive, depending on the proteins' shape, height, contact angle with the bilayer, as…

Statistical Mechanics · Physics 2007-05-23 Tom Chou , Ken S. Kim , George Oster

For the contact of two finite portions of interacting rigid crystalline surfaces, we compute the dependence of the pinning energy barrier on the misfit angle and contact area. The resulting data are used to investigate the distribution of…

Statistical Mechanics · Physics 2011-07-19 Nicola Manini , O. M. Braun

We consider a photonic crystal (PC) doped with four-level atoms whose intermediate transition is coupled near-resonantly with a photonic band-gap edge. We show that two photons, each coupled to a different atomic transition in such atoms,…

Quantum Physics · Physics 2009-11-06 David Petrosyan , Gershon Kurizki

Two-dimensional plasma crystals are characterized by a strong up-and-down asymmetry not only due to gravity but also due to the presence of plasma flow at the location of particles. We study for the first time the interaction of a…

Plasma Physics · Physics 2012-09-17 C. -R. Du , V. Nosenko , S. Zhdanov , H. M. Thomas , G. E. Morfill

We explore the interplay between the protein-protein interactions network and the expression of the interacting proteins. It is shown that interacting proteins are expressed in significantly more similar cellular concentrations. This is…

Molecular Networks · Quantitative Biology 2007-05-23 Shai Carmi , Erez Y. Levanon , Shlomo Havlin , Eli Eisenberg

A simple one-dimensional gas-piston kinetic model gives the interaction potential between two colliding heavy ions. In the frame of the classical, thermodynamical approach, the colliding heavy ions are not submitted to friction, but…

Nuclear Theory · Physics 2019-05-10 Mario J. Pinheiro

The effective interaction between charged colloidal particles confined between two planar like-charged walls is investigated using computer simulations of the primitive model describing asymmetric electrolytes. In detail, we calculate the…

Soft Condensed Matter · Physics 2016-08-15 E. Allahyarov , I. D'Amico , H. Löwen

How will the electrostatic interaction between two point charges change if they are shielded from the other by a dielectrical slab? While the physical setting of this electromagnetic problem is relatively simple, it is easy to be wronged…

Classical Physics · Physics 2023-03-20 Long T. Nguyen , Kim Tuan Do , Duy V. Nguyen , Trung Phan

Globular proteins as well as recently synthesized colloids engineered with differently charged surface regions have in common a reduced bonding valence and a complex interaction pattern dominated by like-charge attraction and…

Soft Condensed Matter · Physics 2024-02-02 Daniele Notarmuzi , Emanuela Bianchi

We examine the role of electrostatic interactions in the assembly of empty spherical viral capsids. The charges on the protein subunits that make the viral capsid mutually interact and are expected to yield electrostatic repulsion acting…

Biological Physics · Physics 2007-12-24 Antonio Siber , Rudolf Podgornik

We analyze the force on a point charge moving at relativistic speeds parallel to the surface of a uniaxial dielectric. Two cases are examined: a lossless dielectric with no dispersion and a dielectric with a plasma type response. The…

Classical Physics · Physics 2013-04-19 Primož Rebernik Ribič , Rudolf Podgornik

We examine the interactions between actively rotating proteins moving in a membrane. Experimental evidence suggests that such rotor proteins, like the ATP synthases of the inner mitochondrial membrane, can arrange themselves into lattices.…

Soft Condensed Matter · Physics 2019-10-09 Naomi Oppenheimer , David B. Stein , Michael J. Shelley

Understanding the molecular mechanisms driving the binding between bio-molecules is a crucial challenge in molecular biology. In this respect, characteristics like the preferentially hydrophobic composition of the binding interfaces, the…

Advances in experimental techniques and in theoretical models have improved our understanding of protein crystallization. But they have also left open questions regarding the protein phase behavior and self-assembly kinetics, such as why…

Soft Condensed Matter · Physics 2014-03-19 Diana Fusco , Patrick Charbonneau

Interiors of neutron stars are ultra-dense and may contain a core of deconfined quark matter. Such a core connects to the outer layers smoothly or through a sharp microscopic interface or through an intermediate macroscopic layer of…

High Energy Physics - Phenomenology · Physics 2020-04-15 Andreas Schmitt

We compare weak and strong coupling theory of counterion-mediated electrostatic interactions between two asymmetrically charged plates with extensive Monte-Carlo simulations. Analytical results in both weak and strong coupling limits…

Soft Condensed Matter · Physics 2009-05-26 M. Kanduc , M. Trulsson , A. Naji , Y. Burak , J. Forsman , R. Podgornik

The contribution of electrostatic interactions to the free energy of binding between model protein and a ceramic implant surface in the aqueous solvent, considered in the framework of the non-local electrostatic model, is calculated as a…

Biological Physics · Physics 2014-07-29 A. I. Rubinstein , R. F. Sabirianov , F. Namavar

We present a model, based on symmetry and geometry, for proteins. Using elementary ideas from mathematics and physics, we derive the geometries of discrete helices and sheets. We postulate a compatible solvent-mediated emergent pairwise…

Soft Condensed Matter · Physics 2023-06-21 Jayanth R. Banavar , Achille Giacometti , Trinh X. Hoang , Amos Maritan , Tatjana Škrbić

Particles bound to an interface interact because they deform its shape. The stresses that result are fully encoded in the geometry and described by a divergence-free surface stress tensor. This stress tensor can be used to express the force…

Soft Condensed Matter · Physics 2007-05-23 Martin Michael Mueller , Markus Deserno , Jemal Guven