Related papers: Localization of Denaturation Bubbles in Random DNA…
We study diamagnetically levitated foams with widely different liquid fractions. Due to the levitation, drainage is effectively suppressed and the dynamics is driven by the coarsening of the foam bubbles. For dry foams, the bubble size…
We analyze a bubble forming system composed of particles with competing long range repulsive and short range attractive interactions driven over a quasi-one-dimensional periodic substrate. We find various pinned and sliding phases as a…
We develop a rigorous treatment of discontinuous stochastic unitary evolution for a system of quantum particles that interacts singularly with quantum "bubbles" at random instants of time. This model of a "cloud chamber" allows to watch and…
The diffraction of fast atoms at crystal surfaces is ideal for a detailed investigation of the surface electronic density. However, instead of sharp diffraction spots, most experiments show elongated streaks characteristic of inelastic…
Test experiments of hybridization in DNA microarrays show systematic deviations from the equilibrium isotherms. We argue that these deviations are due to the presence of a partially hybridized long-lived state, which we include in a kinetic…
The atmospheres of weakly-magnetized neutron stars expand hydrostatically and rotate differentially during thermonuclear X-ray bursts. Differential rotation is probably related to the frequency drifts of millisecond burst oscillations…
A simple Langevin approach is used to study stationary properties of the Peyrard-Bishop-Dauxois model for DNA, allowing known properties to be recovered in an easy way. Results are shown for the denaturation transition in homogeneous…
The distribution of bubble lengths in double-stranded DNA is presented for segments of varying guanine-cytosine (GC) content, obtained with Monte Carlo simulations using the Peyrard-Bishop-Dauxois model at 310 K. An analytical description…
Self-oscillations underlie many natural phenomena such as heartbeat, ocean waves, and the pulsation of variable stars. From pendulum clocks to the behavior of animal groups, self-oscillation is one of the keys to the understanding of…
Strongly correlated systems can exhibit surprising phenomena when brought in a state far from equilibrium. A spectacular example are quantum avalanches, that have been predicted to run through a many-body--localized system and delocalize…
Dynamical localization is one of the most startling manifestations of quantum interference, where the evolution of a simple system is frozen out under a suitably tuned coherent periodic drive. Here, we show that, although any randomness in…
In the study of the thermalization of closed quantum systems, the role of kinetic constraints on the temporal dynamics and the eventual thermalization is attracting significant interest. Kinetic constraints typically lead to long-lived…
We use a statistical mechanical model to study nonthermal denaturation of DNA in the presence of protein-mediated loops. We find that looping proteins which randomly link DNA bases located at a distance along the chain could cause a…
We analyze rigorously the dynamics of the entanglement between two qubits which interact only through collective and local environments. Our approach is based on the resonance perturbation theory which assumes a small interaction between…
We present a Direct Numerical Simulation (DNS) study of buoyancy-driven bubbly flows in the presence of large scale driving that generates turbulence. On increasing the turbulence intensity: (a) the bubble trajectories become more curved,…
We study the complex dynamics of a one-dimensional Bose gas subjected to a dissipative local defect which induces one-body atom losses. In experiments these atom losses occur, for example, when a focused electron or light beam or a single…
We study DNA denaturation by integrating elasticity -- as described by the Gaussian network model -- with bond binding energies, distinguishing between different base-pair and stacking energies. We use exact calculation, within the model,…
The interplay between interaction, disorder, and dissipation has shown a rich phenomenology. Here we investigate a disordered XXZ spin chain in contact with a bath which, alone, would drive the system towards a highly delocalized and…
We report a Molecular Dynamics study of homogenous bubble nucleation in a Lennard-Jones fluid. The rate of bubble nucleation is estimated using forward-flux sampling (FFS). We find that cavitation starts with compact bubbles rather than…
Cells regulate gene expression in part by forming DNA-protein condensates in the nucleus. While existing theories describe the equilibrium size and stability of such condensates, their dynamics remain less understood. Here, we use…